Understanding the Polyploidisation Process of Hexaploid Chrysanthemum

N.H.M. van Lieshout; M.P.W. van Kaauwen; L.P. Kodde; P.F.P. Arens; M.J.M. Smulders; R.G.F. Visser; H.J. Finkers

doi:10.5281/zenodo.3618026

Understanding the Polyploidisation Process of Hexaploid Chrysanthemum

N.H.M. van Lieshout^*, M.P.W. van Kaauwen, L.P. Kodde, P.F.P. Arens, M.J.M. Smulders, R.G.F. Visser, H.J. Finkers

^*Corresponding author for this work

Research output: Contribution to conference › Poster › Academic

Abstract

To shed light on the polyploidisation process of cultivated chrysanthemum we develop a high quality genome sequence of a diploid wild species as well as re-sequencing a selection of other possible progenitors of the current, economically important, hexaploid varieties. With a large and highly heterozygous genome even the diploids have to date proven difficult to assemble. Here we present a novel assembly based on long and short read sequencing technology and using polyploid aware assembly tools. We also provide some insight into how the species fit together into the larger chrysanthemum family.

Original language	English
DOIs	https://doi.org/10.5281/zenodo.3618026
Publication status	Published - 21 Jan 2020
Event	Plant and Animal Genome Conference - San Diego, United States Duration: 11 Jan 2020 → 15 Jan 2020

Conference

Conference	Plant and Animal Genome Conference
Abbreviated title	PAG
Country/Territory	United States
City	San Diego
Period	11/01/20 → 15/01/20

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10.5281/zenodo.3618026Licence: CC BY

https://edepot.wur.nl/579098Licence: CC BY

KV 1605-114 Understanding polyploïdisation process and genome complexity hexaploid chrysanthemum (BO-68-001-002, BO-50-002-038, BO-26.03-009-006)
Arens, P. (Project Leader)
1/01/17 → 31/12/21
Project: LVVN project

Cite this

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title = "Understanding the Polyploidisation Process of Hexaploid Chrysanthemum",

abstract = "To shed light on the polyploidisation process of cultivated chrysanthemum we develop a high quality genome sequence of a diploid wild species as well as re-sequencing a selection of other possible progenitors of the current, economically important, hexaploid varieties. With a large and highly heterozygous genome even the diploids have to date proven difficult to assemble. Here we present a novel assembly based on long and short read sequencing technology and using polyploid aware assembly tools. We also provide some insight into how the species fit together into the larger chrysanthemum family.",

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T1 - Understanding the Polyploidisation Process of Hexaploid Chrysanthemum

AU - van Lieshout, N.H.M.

AU - van Kaauwen, M.P.W.

AU - Kodde, L.P.

AU - Arens, P.F.P.

AU - Smulders, M.J.M.

AU - Visser, R.G.F.

AU - Finkers, H.J.

PY - 2020/1/21

Y1 - 2020/1/21

N2 - To shed light on the polyploidisation process of cultivated chrysanthemum we develop a high quality genome sequence of a diploid wild species as well as re-sequencing a selection of other possible progenitors of the current, economically important, hexaploid varieties. With a large and highly heterozygous genome even the diploids have to date proven difficult to assemble. Here we present a novel assembly based on long and short read sequencing technology and using polyploid aware assembly tools. We also provide some insight into how the species fit together into the larger chrysanthemum family.

AB - To shed light on the polyploidisation process of cultivated chrysanthemum we develop a high quality genome sequence of a diploid wild species as well as re-sequencing a selection of other possible progenitors of the current, economically important, hexaploid varieties. With a large and highly heterozygous genome even the diploids have to date proven difficult to assemble. Here we present a novel assembly based on long and short read sequencing technology and using polyploid aware assembly tools. We also provide some insight into how the species fit together into the larger chrysanthemum family.

U2 - 10.5281/zenodo.3618026

DO - 10.5281/zenodo.3618026

M3 - Poster

T2 - Plant and Animal Genome Conference

Y2 - 11 January 2020 through 15 January 2020

ER -

Understanding the Polyploidisation Process of Hexaploid Chrysanthemum

Abstract

Conference

Access to Document

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Projects

KV 1605-114 Understanding polyploïdisation process and genome complexity hexaploid chrysanthemum (BO-68-001-002, BO-50-002-038, BO-26.03-009-006)

Cite this