Towards metagenome-scale models for industrial applications-the case of Lactic Acid Bacteria

F. Branco Dos Santos, W.M. de Vos, B. Teusink

Research output: Contribution to journalArticleAcademicpeer-review

28 Citations (Scopus)

Abstract

We review the uses and limitations of modelling approaches that are in use in the field of Lactic Acid Bacteria (LAB). We describe recent developments in model construction and computational methods, starting from application of such models to monocultures. However, since most applications in food biotechnology involve complex nutrient environments and mixed cultures, we extend the scope to discuss developments in modelling such complex systems. With metagenomics and meta-functional genomics data becoming available, the developments in genome-scale community models are discussed. We conclude that exploratory tools are available and useful, but truly predictive mechanistic models will remain a major challenge in the field
Original languageEnglish
Pages (from-to)200-206
JournalCurrent Opinion in Biotechnology
Volume24
Issue number2
DOIs
Publication statusPublished - 2013

Keywords

  • comparative systems biology
  • lactobacillus-plantarum
  • lactococcus-lactis
  • metabolic reconstruction
  • intestinal microbiota
  • escherichia-coli
  • gut
  • growth
  • identification
  • fermentation

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