Toward better data sharing methods for genebanks

Research output: Contribution to conferencePaperAcademicpeer-review

Abstract

The conservation of plant genetic resources (PGR) is an important task that requires collaborative effort from many stakeholders. For this, common means of data exchange and effective methods to profit from the collected information need to be established. In this paper, we describe a demonstrator promoting findability of PGR, according to the FAIR (Findable, Accessible, Interoperable & Reusable) data principles. PGR providers can each expose their germplasm information, using the FAO Multicrop Passport Descriptor (MCPD), which subsequently can be queried in a distributed manner via a single user interface. PGR users can select among predefined questions, for example for specific crops, accessions or phenotypes. On the back end, data integration from a distributed query is achieved through annotations with the MCPD semantics.

Original languageEnglish
Number of pages6
Publication statusPublished - 2017
Event2nd International Workshop on Semantics for Biodiversity: CEUR Workshop Proceedings - Vienna, Austria
Duration: 22 Oct 201722 Oct 2017

Conference

Conference2nd International Workshop on Semantics for Biodiversity
CountryAustria
CityVienna
Period22/10/1722/10/17

Fingerprint

Data integration
Electronic data interchange
User interfaces
Crops
Conservation
Profitability
Semantics

Keywords

  • Data modelling
  • FAIR
  • Genebanks
  • Germplasm
  • Interoperability
  • Linked data
  • MCPD
  • Metadata
  • Plant genetic resources
  • Semantic web

Cite this

Papoutsoglou, E., Kaliyaperumal, R., Van Hintum, T., Visser, R. G. F., Athanasiadis, I. N., & Finkers, R. (2017). Toward better data sharing methods for genebanks. Paper presented at 2nd International Workshop on Semantics for Biodiversity, Vienna, Austria.
Papoutsoglou, Evangelia ; Kaliyaperumal, Rajaram ; Van Hintum, Theo ; Visser, Richard G.F. ; Athanasiadis, Ioannis N. ; Finkers, Richard. / Toward better data sharing methods for genebanks. Paper presented at 2nd International Workshop on Semantics for Biodiversity, Vienna, Austria.6 p.
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abstract = "The conservation of plant genetic resources (PGR) is an important task that requires collaborative effort from many stakeholders. For this, common means of data exchange and effective methods to profit from the collected information need to be established. In this paper, we describe a demonstrator promoting findability of PGR, according to the FAIR (Findable, Accessible, Interoperable & Reusable) data principles. PGR providers can each expose their germplasm information, using the FAO Multicrop Passport Descriptor (MCPD), which subsequently can be queried in a distributed manner via a single user interface. PGR users can select among predefined questions, for example for specific crops, accessions or phenotypes. On the back end, data integration from a distributed query is achieved through annotations with the MCPD semantics.",
keywords = "Data modelling, FAIR, Genebanks, Germplasm, Interoperability, Linked data, MCPD, Metadata, Plant genetic resources, Semantic web",
author = "Evangelia Papoutsoglou and Rajaram Kaliyaperumal and {Van Hintum}, Theo and Visser, {Richard G.F.} and Athanasiadis, {Ioannis N.} and Richard Finkers",
year = "2017",
language = "English",
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Papoutsoglou, E, Kaliyaperumal, R, Van Hintum, T, Visser, RGF, Athanasiadis, IN & Finkers, R 2017, 'Toward better data sharing methods for genebanks' Paper presented at 2nd International Workshop on Semantics for Biodiversity, Vienna, Austria, 22/10/17 - 22/10/17, .

Toward better data sharing methods for genebanks. / Papoutsoglou, Evangelia; Kaliyaperumal, Rajaram; Van Hintum, Theo; Visser, Richard G.F.; Athanasiadis, Ioannis N.; Finkers, Richard.

2017. Paper presented at 2nd International Workshop on Semantics for Biodiversity, Vienna, Austria.

Research output: Contribution to conferencePaperAcademicpeer-review

TY - CONF

T1 - Toward better data sharing methods for genebanks

AU - Papoutsoglou, Evangelia

AU - Kaliyaperumal, Rajaram

AU - Van Hintum, Theo

AU - Visser, Richard G.F.

AU - Athanasiadis, Ioannis N.

AU - Finkers, Richard

PY - 2017

Y1 - 2017

N2 - The conservation of plant genetic resources (PGR) is an important task that requires collaborative effort from many stakeholders. For this, common means of data exchange and effective methods to profit from the collected information need to be established. In this paper, we describe a demonstrator promoting findability of PGR, according to the FAIR (Findable, Accessible, Interoperable & Reusable) data principles. PGR providers can each expose their germplasm information, using the FAO Multicrop Passport Descriptor (MCPD), which subsequently can be queried in a distributed manner via a single user interface. PGR users can select among predefined questions, for example for specific crops, accessions or phenotypes. On the back end, data integration from a distributed query is achieved through annotations with the MCPD semantics.

AB - The conservation of plant genetic resources (PGR) is an important task that requires collaborative effort from many stakeholders. For this, common means of data exchange and effective methods to profit from the collected information need to be established. In this paper, we describe a demonstrator promoting findability of PGR, according to the FAIR (Findable, Accessible, Interoperable & Reusable) data principles. PGR providers can each expose their germplasm information, using the FAO Multicrop Passport Descriptor (MCPD), which subsequently can be queried in a distributed manner via a single user interface. PGR users can select among predefined questions, for example for specific crops, accessions or phenotypes. On the back end, data integration from a distributed query is achieved through annotations with the MCPD semantics.

KW - Data modelling

KW - FAIR

KW - Genebanks

KW - Germplasm

KW - Interoperability

KW - Linked data

KW - MCPD

KW - Metadata

KW - Plant genetic resources

KW - Semantic web

M3 - Paper

ER -

Papoutsoglou E, Kaliyaperumal R, Van Hintum T, Visser RGF, Athanasiadis IN, Finkers R. Toward better data sharing methods for genebanks. 2017. Paper presented at 2nd International Workshop on Semantics for Biodiversity, Vienna, Austria.