The use of genomics in European livestock genebank collections

R.P.M.A. Crooijmans, Licia Colli, A. Stella, P. Ajmone-Marsan, S.J. Hiemstra, M. Tixier-Boichard

Research output: Chapter in Book/Report/Conference proceedingAbstract

Abstract

often in time and overlap between the different versions and platforms is not always guaranteed. Furthermore, in several cases arrays are not freely available without permission of the consortia involved in their development. In the
framework of the Horizon2020 IMAGE project, we have identied a large pool of SNP variants by whole genome sequencing of over 500 individuals from a large variety of local breeds and species and combined this with publicly available SNPs to develop panels to be used for different applications and analyses. One of these applications is the development of a multi- species SNP array (that might include cattle, sheep, goat, pig chicken, turkey, buffalo, horse, duck, rabbit, camel, camelids, honey bee) containing 10k SNPs per species selected from the total SNP pool. This low cost SNP array will make it possible to genotype a large number of samples of the different species collected in gene banks worldwide. Opening the molecular reservoir of variation in these gene bank collections will add value to the material stored, detect the uniqueness of the collections and monitor variation changes over time. The generated whole genome sequences will also be used in genome wide association studies (GWAS) for specic traits present in traditional breeds, like e.g. ptilopody and bantam traits in chicken. The variants related to these and other traits of interest, detected in the course of IMAGE project, or variants presented in literature for specic traits, will also
be selected and added on the multi-species SNP array. The IMAGE project received funding from the EU H2020 Research and Innovation Programme under the grant agreement n° 677353.
Original languageEnglish
Title of host publicationBook of Abstracts of the 70th Annual Meeting of the European Federation of Animal Science
Place of PublicationWageningen
PublisherWageningen Academic Publishers
Pages365-365
Volume25
ISBN (Electronic)9789086868902
ISBN (Print)9789086863396
Publication statusPublished - 28 Aug 2019
Event70th Annual Meeting of the European Federation of Animal Science (2019) - Ghent, Belgium
Duration: 26 Aug 201930 Aug 2019
https://www.eaap2019.org/EN/Home/tabid/9594/Default.aspx

Publication series

NameEAAP Book of Abstracts
PublisherEuropean Federation of Animal Science (EAAP)
Volume25

Conference

Conference70th Annual Meeting of the European Federation of Animal Science (2019)
Abbreviated titleEAAP 2019
CountryBelgium
CityGhent
Period26/08/1930/08/19
Internet address

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