The Generation Challenge Programme comparative plant stress-responsive gene catalogue

S. Wanchana; S. Thongjuea; V.J. Ulat; M. Anacleto; R. Mauleon; M. Conte; M. Rouard; M. Ruiz; N. Krishnamurthy; K. Sjolander; T.J.L. van Hintum; R.M. Bruskiewich

doi:10.1093/nar/gkm798

The Generation Challenge Programme comparative plant stress-responsive gene catalogue

S. Wanchana
, S. Thongjuea
, V.J. Ulat
, M. Anacleto
, R. Mauleon
, M. Conte
, M. Rouard
, M. Ruiz
, N. Krishnamurthy
, K. Sjolander
, T.J.L. van Hintum
, R.M. Bruskiewich

Research output: Contribution to journal › Article › Academic › peer-review

12 Citations (Scopus)

Abstract

The Generation Challenge Programme (GCP; www.generationcp.org) has developed an online resource documenting stress-responsive genes comparatively across plant species. This public resource is a compendium of protein families, phylogenetic trees, multiple sequence alignments (MSA) and associated experimental evidence. The central objective of this resource is to elucidate orthologous and paralogous relationships between plant genes that may be involved in response to environmental stress, mainly abiotic stresses such as water deficit (`drought¿). The web-based graphical user interface (GUI) of the resource includes query and visualization tools that allow diverse searches and browsing of the underlying project database. The web interface can be accessed at http://dayhoff.generationcp.org

Original language	English
Pages (from-to)	D943-D946
Journal	Nucleic acids research
Volume	36
DOIs	https://doi.org/10.1093/nar/gkm798
Publication status	Published - 2008

Keywords

phylogenomic inference
expression patterns
alignment
genomics

Access to Document

10.1093/nar/gkm798

Cite this

@article{c1035702ff664059b9dca4b133ee5438,

title = "The Generation Challenge Programme comparative plant stress-responsive gene catalogue",

abstract = "The Generation Challenge Programme (GCP; www.generationcp.org) has developed an online resource documenting stress-responsive genes comparatively across plant species. This public resource is a compendium of protein families, phylogenetic trees, multiple sequence alignments (MSA) and associated experimental evidence. The central objective of this resource is to elucidate orthologous and paralogous relationships between plant genes that may be involved in response to environmental stress, mainly abiotic stresses such as water deficit (`drought¿). The web-based graphical user interface (GUI) of the resource includes query and visualization tools that allow diverse searches and browsing of the underlying project database. The web interface can be accessed at http://dayhoff.generationcp.org",

keywords = "phylogenomic inference, expression patterns, alignment, genomics",

author = "S. Wanchana and S. Thongjuea and V.J. Ulat and M. Anacleto and R. Mauleon and M. Conte and M. Rouard and M. Ruiz and N. Krishnamurthy and K. Sjolander and \{van Hintum\}, T.J.L. and R.M. Bruskiewich",

year = "2008",

doi = "10.1093/nar/gkm798",

language = "English",

volume = "36",

pages = "D943--D946",

journal = "Nucleic acids research",

issn = "0305-1048",

publisher = "Oxford University Press",

}

TY - JOUR

T1 - The Generation Challenge Programme comparative plant stress-responsive gene catalogue

AU - Wanchana, S.

AU - Thongjuea, S.

AU - Ulat, V.J.

AU - Anacleto, M.

AU - Mauleon, R.

AU - Conte, M.

AU - Rouard, M.

AU - Ruiz, M.

AU - Krishnamurthy, N.

AU - Sjolander, K.

AU - van Hintum, T.J.L.

AU - Bruskiewich, R.M.

PY - 2008

Y1 - 2008

N2 - The Generation Challenge Programme (GCP; www.generationcp.org) has developed an online resource documenting stress-responsive genes comparatively across plant species. This public resource is a compendium of protein families, phylogenetic trees, multiple sequence alignments (MSA) and associated experimental evidence. The central objective of this resource is to elucidate orthologous and paralogous relationships between plant genes that may be involved in response to environmental stress, mainly abiotic stresses such as water deficit (`drought¿). The web-based graphical user interface (GUI) of the resource includes query and visualization tools that allow diverse searches and browsing of the underlying project database. The web interface can be accessed at http://dayhoff.generationcp.org

AB - The Generation Challenge Programme (GCP; www.generationcp.org) has developed an online resource documenting stress-responsive genes comparatively across plant species. This public resource is a compendium of protein families, phylogenetic trees, multiple sequence alignments (MSA) and associated experimental evidence. The central objective of this resource is to elucidate orthologous and paralogous relationships between plant genes that may be involved in response to environmental stress, mainly abiotic stresses such as water deficit (`drought¿). The web-based graphical user interface (GUI) of the resource includes query and visualization tools that allow diverse searches and browsing of the underlying project database. The web interface can be accessed at http://dayhoff.generationcp.org

KW - phylogenomic inference

KW - expression patterns

KW - alignment

KW - genomics

U2 - 10.1093/nar/gkm798

DO - 10.1093/nar/gkm798

M3 - Article

SN - 0305-1048

VL - 36

SP - D943-D946

JO - Nucleic acids research

JF - Nucleic acids research

ER -

The Generation Challenge Programme comparative plant stress-responsive gene catalogue

Abstract

Keywords

Access to Document

Fingerprint

Cite this