The application of multi-locus DNA metabarcoding in traditional medicines

Alfred J. Arulandhu, Martijn Staats, Rico Hagelaar, Tamara Peelen, E.J. Kok*

*Corresponding author for this work

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Abstract

Traditional medicines (TMs) are globally traded and the consumer market is estimated to be $83 billion per annum. The diversity of TM matrices and poor quality of DNA extracted from highly processed TMs makes it challenging to apply standardized DNA-based procedures for ingredient analysis. In the present study, multiple DNA extraction methods were compared for the ability to obtain amplifiable DNA from TMs belonging to different matrices. The best performing DNA extraction was used to successfully obtain DNA from 18 TMs that were subsequently analyzed with a multi-locus DNA metabarcoding method to assess the species composition. In the analysis mini-barcodes accounted for the identification of most of the taxa in the TMs. The plant (ITS2) and animal (mini-16S) mini-barcode markers showed to allow species level identification of targets. In a few cases, full-length barcode markers, requiring higher quality DNA, proved to be critically informative at this level. The applied strategy resulted in the identification of a wide range of declared and undeclared ingredients, including endangered species (Ursus arctos and Aloe sp.). In 14 TMs less than 65% of the identified taxa matched the product label, and in two TMs none of the identified species matched the ingredients list. The current study shows that a multi-locus DNA metabarcoding approach is an informative analytical tool for species identification in TMs, including the potential identification of endangered species.

Original languageEnglish
Pages (from-to)87-94
JournalJournal of Food Composition and Analysis
Volume79
DOIs
Publication statusPublished - Jun 2019

Fingerprint

Traditional Medicine
traditional medicine
loci
DNA
barcoding
Endangered Species
ingredients
endangered species
Aloe
Ursidae
product labeling
Ursus arctos
markets
species diversity
methodology

Keywords

  • Customs authority
  • Declared and undeclared ingredients
  • DNA extraction
  • Endangered species
  • Multi-locus DNA metabarcoding
  • Traditional medicines

Cite this

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title = "The application of multi-locus DNA metabarcoding in traditional medicines",
abstract = "Traditional medicines (TMs) are globally traded and the consumer market is estimated to be $83 billion per annum. The diversity of TM matrices and poor quality of DNA extracted from highly processed TMs makes it challenging to apply standardized DNA-based procedures for ingredient analysis. In the present study, multiple DNA extraction methods were compared for the ability to obtain amplifiable DNA from TMs belonging to different matrices. The best performing DNA extraction was used to successfully obtain DNA from 18 TMs that were subsequently analyzed with a multi-locus DNA metabarcoding method to assess the species composition. In the analysis mini-barcodes accounted for the identification of most of the taxa in the TMs. The plant (ITS2) and animal (mini-16S) mini-barcode markers showed to allow species level identification of targets. In a few cases, full-length barcode markers, requiring higher quality DNA, proved to be critically informative at this level. The applied strategy resulted in the identification of a wide range of declared and undeclared ingredients, including endangered species (Ursus arctos and Aloe sp.). In 14 TMs less than 65{\%} of the identified taxa matched the product label, and in two TMs none of the identified species matched the ingredients list. The current study shows that a multi-locus DNA metabarcoding approach is an informative analytical tool for species identification in TMs, including the potential identification of endangered species.",
keywords = "Customs authority, Declared and undeclared ingredients, DNA extraction, Endangered species, Multi-locus DNA metabarcoding, Traditional medicines",
author = "Arulandhu, {Alfred J.} and Martijn Staats and Rico Hagelaar and Tamara Peelen and E.J. Kok",
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The application of multi-locus DNA metabarcoding in traditional medicines. / Arulandhu, Alfred J.; Staats, Martijn; Hagelaar, Rico; Peelen, Tamara; Kok, E.J.

In: Journal of Food Composition and Analysis, Vol. 79, 06.2019, p. 87-94.

Research output: Contribution to journalArticleAcademicpeer-review

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T1 - The application of multi-locus DNA metabarcoding in traditional medicines

AU - Arulandhu, Alfred J.

AU - Staats, Martijn

AU - Hagelaar, Rico

AU - Peelen, Tamara

AU - Kok, E.J.

PY - 2019/6

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