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Results: We found the conservative variety of 3-Nearest Neighbours to be the most reliable classifier when varying species representation and misclassification rate. Through the analysis of the three complete datasets, this finding showed generic value. Additionally, we present various options for marker selection for classification taks such as these.
Conclusions: Large-scale genomic data are increasingly being produced for genetic resources collections. These data are useful to address species classification issues regarding crop wild relatives, and improve genebank documentation. Implementation of a classification method that can improve the quality of bad datasets without gold standard training data is considered an innovative and efficient method to improve gene bank documentation.
- Crop wild relatives
- Gene bank documentation
- Machine learning
- Plant genetic resources
- Species classification
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84 tomato accessions - Exploring genetic variation in the tomato (Solanum section Lycopersicon) clade by whole-genome sequencing
Aflitos, S. (Creator), Schijlen, E. (Creator), de Jong, H. (Creator), de Ridder, D. (Creator), Smit, S. (Creator), Finkers, R. (Creator), Bakker, F. (Creator), van de Geest, H. (Creator), te Lintel Hekkert, B. (Creator), van Haarst, J. (Creator), Smits, L. (Creator), Koops, A. (Creator), Sanchez-Perez, M. J. (Creator), van Heusden, S. (Creator), Visser, R. (Creator), Schranz, E. (Creator) & Peters, S. (Creator), Plant Research International, 29 Jan 2014
1/01/13 → 31/12/22
1/01/15 → 31/12/21