Reconstructing the early evolution of the fungi using a six gene phylogeny

T.Y. James; F. Kauff; C.L. Schoch; P.B. Matheny; V. Hofstetter; C.J. Cox; G. Celio; C. Gueidan; E. Fraker; J. Miadlikowska; H.T. Lumbsch; A. Rauhut; V. Reeb; A.E. Arnold; A. Amtoft; J.E. Stajich; K. Hosaka; G.H. Sung; D. Johnson; B. O'Rourke; M. Binder; J.M. Curtis; J.C. Slot; Z. Wang; A.W. Wilson; A. Schüßler; J.E. Longcore; K. O'Donnell; S. Mozley-Standridge; D. Porter; P.M. Letcher; M.J. Powell; J.W. Taylor; M.M. White; G.W. Griffith; D.R. Davies; J. Sugiyama; A.Y. Rossman; J.D. Rogers; D.H. Pfister; D. Hewitt; K. Hansen; S. Hambleton; R.A. Shoemaker; J. Kohlmeyer; B. Volkmann-Kohlmeyer; R.A. Spotts; M. Serdani; P.W. Crous; K.W. Hughes; K. Matsuura; E. Langer; G. Langer; W.A. Untereiner; R. Lücking; B. Büdel; D.M. Geiser; A. Aptroot; P. Diederich; I. Schmitt; M. Schultz; R. Yahr; D.S. Hibbett; F. Lutzoni; D.J. McLaughlin; J.W. Spatafora; R. Vilgalys

doi:10.1038/nature05110

Reconstructing the early evolution of the fungi using a six gene phylogeny

T.Y. James, F. Kauff, C.L. Schoch, P.B. Matheny, V. Hofstetter, C.J. Cox, G. Celio, C. Gueidan, E. Fraker, J. Miadlikowska, H.T. Lumbsch, A. Rauhut, V. Reeb, A.E. Arnold, A. Amtoft, J.E. Stajich, K. Hosaka, G.H. Sung, D. Johnson, B. O'RourkeM. Binder, J.M. Curtis, J.C. Slot, Z. Wang, A.W. Wilson, A. Schüßler, J.E. Longcore, K. O'Donnell, S. Mozley-Standridge, D. Porter, P.M. Letcher, M.J. Powell, J.W. Taylor, M.M. White, G.W. Griffith, D.R. Davies, J. Sugiyama, A.Y. Rossman, J.D. Rogers, D.H. Pfister, D. Hewitt, K. Hansen, S. Hambleton, R.A. Shoemaker, J. Kohlmeyer, B. Volkmann-Kohlmeyer, R.A. Spotts, M. Serdani, P.W. Crous, K.W. Hughes, K. Matsuura, E. Langer, G. Langer, W.A. Untereiner, R. Lücking, B. Büdel, D.M. Geiser, A. Aptroot, P. Diederich, I. Schmitt, M. Schultz, R. Yahr, D.S. Hibbett, F. Lutzoni, D.J. McLaughlin, J.W. Spatafora, R. Vilgalys

Laboratory of Phytopathology

Research output: Contribution to journal › Article › Academic › peer-review

1180 Citations (Scopus)

Abstract

The ancestors of fungi are believed to be simple aquatic forms with flagellated spores, similar to members of the extant phylum Chytridiomycota (chytrids). Current classifications assume that chytrids form an early-diverging clade within the kingdom Fungi and imply a single loss of the spore flagellum, leading to the diversification of terrestrial fungi. Here we develop phylogenetic hypotheses for Fungi using data from six gene regions and nearly 200 species. Our results indicate that there may have been at least four independent losses of the flagellum in the kingdom Fungi. These losses of swimming spores coincided with the evolution of new mechanisms of spore dispersal, such as aerial dispersal in mycelial groups and polar tube eversion in the microsporidia (unicellular forms that lack mitochondria). The enigmatic microsporidia seem to be derived from an endoparasitic chytrid ancestor similar to Rozella allomycis, on the earliest diverging branch of the fungal phylogenetic tree

Original language	English
Pages (from-to)	818-822
Journal	Nature
Volume	443
Issue number	7113
DOIs	https://doi.org/10.1038/nature05110
Publication status	Published - 2006

Keywords

arbuscular mycorrhizal fungi
molecular phylogeny
maximum-likelihood
land plants
tree
microsporidia
sequences
animals
chytridiomycota
glomeromycota

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James, T. Y., Kauff, F., Schoch, C. L., Matheny, P. B., Hofstetter, V., Cox, C. J., Celio, G., Gueidan, C., Fraker, E., Miadlikowska, J., Lumbsch, H. T., Rauhut, A., Reeb, V., Arnold, A. E., Amtoft, A., Stajich, J. E., Hosaka, K., Sung, G. H., Johnson, D., ... Vilgalys, R. (2006). Reconstructing the early evolution of the fungi using a six gene phylogeny. Nature, 443(7113), 818-822. https://doi.org/10.1038/nature05110

James, T.Y. ; Kauff, F. ; Schoch, C.L. ; Matheny, P.B. ; Hofstetter, V. ; Cox, C.J. ; Celio, G. ; Gueidan, C. ; Fraker, E. ; Miadlikowska, J. ; Lumbsch, H.T. ; Rauhut, A. ; Reeb, V. ; Arnold, A.E. ; Amtoft, A. ; Stajich, J.E. ; Hosaka, K. ; Sung, G.H. ; Johnson, D. ; O'Rourke, B. ; Binder, M. ; Curtis, J.M. ; Slot, J.C. ; Wang, Z. ; Wilson, A.W. ; Schüßler, A. ; Longcore, J.E. ; O'Donnell, K. ; Mozley-Standridge, S. ; Porter, D. ; Letcher, P.M. ; Powell, M.J. ; Taylor, J.W. ; White, M.M. ; Griffith, G.W. ; Davies, D.R. ; Sugiyama, J. ; Rossman, A.Y. ; Rogers, J.D. ; Pfister, D.H. ; Hewitt, D. ; Hansen, K. ; Hambleton, S. ; Shoemaker, R.A. ; Kohlmeyer, J. ; Volkmann-Kohlmeyer, B. ; Spotts, R.A. ; Serdani, M. ; Crous, P.W. ; Hughes, K.W. ; Matsuura, K. ; Langer, E. ; Langer, G. ; Untereiner, W.A. ; Lücking, R. ; Büdel, B. ; Geiser, D.M. ; Aptroot, A. ; Diederich, P. ; Schmitt, I. ; Schultz, M. ; Yahr, R. ; Hibbett, D.S. ; Lutzoni, F. ; McLaughlin, D.J. ; Spatafora, J.W. ; Vilgalys, R. / Reconstructing the early evolution of the fungi using a six gene phylogeny. In: Nature. 2006 ; Vol. 443, No. 7113. pp. 818-822.

@article{880da552535e453f835aaa79a77e4086,

title = "Reconstructing the early evolution of the fungi using a six gene phylogeny",

abstract = "The ancestors of fungi are believed to be simple aquatic forms with flagellated spores, similar to members of the extant phylum Chytridiomycota (chytrids). Current classifications assume that chytrids form an early-diverging clade within the kingdom Fungi and imply a single loss of the spore flagellum, leading to the diversification of terrestrial fungi. Here we develop phylogenetic hypotheses for Fungi using data from six gene regions and nearly 200 species. Our results indicate that there may have been at least four independent losses of the flagellum in the kingdom Fungi. These losses of swimming spores coincided with the evolution of new mechanisms of spore dispersal, such as aerial dispersal in mycelial groups and polar tube eversion in the microsporidia (unicellular forms that lack mitochondria). The enigmatic microsporidia seem to be derived from an endoparasitic chytrid ancestor similar to Rozella allomycis, on the earliest diverging branch of the fungal phylogenetic tree",

keywords = "arbuscular mycorrhizal fungi, molecular phylogeny, maximum-likelihood, land plants, tree, microsporidia, sequences, animals, chytridiomycota, glomeromycota",

author = "T.Y. James and F. Kauff and C.L. Schoch and P.B. Matheny and V. Hofstetter and C.J. Cox and G. Celio and C. Gueidan and E. Fraker and J. Miadlikowska and H.T. Lumbsch and A. Rauhut and V. Reeb and A.E. Arnold and A. Amtoft and J.E. Stajich and K. Hosaka and G.H. Sung and D. Johnson and B. O'Rourke and M. Binder and J.M. Curtis and J.C. Slot and Z. Wang and A.W. Wilson and A. Sch{\"u}{\ss}ler and J.E. Longcore and K. O'Donnell and S. Mozley-Standridge and D. Porter and P.M. Letcher and M.J. Powell and J.W. Taylor and M.M. White and G.W. Griffith and D.R. Davies and J. Sugiyama and A.Y. Rossman and J.D. Rogers and D.H. Pfister and D. Hewitt and K. Hansen and S. Hambleton and R.A. Shoemaker and J. Kohlmeyer and B. Volkmann-Kohlmeyer and R.A. Spotts and M. Serdani and P.W. Crous and K.W. Hughes and K. Matsuura and E. Langer and G. Langer and W.A. Untereiner and R. L{\"u}cking and B. B{\"u}del and D.M. Geiser and A. Aptroot and P. Diederich and I. Schmitt and M. Schultz and R. Yahr and D.S. Hibbett and F. Lutzoni and D.J. McLaughlin and J.W. Spatafora and R. Vilgalys",

year = "2006",

doi = "10.1038/nature05110",

language = "English",

volume = "443",

pages = "818--822",

journal = "Nature",

issn = "0028-0836",

publisher = "Nature Publishing Group",

number = "7113",

}

James, TY, Kauff, F, Schoch, CL, Matheny, PB, Hofstetter, V, Cox, CJ, Celio, G, Gueidan, C, Fraker, E, Miadlikowska, J, Lumbsch, HT, Rauhut, A, Reeb, V, Arnold, AE, Amtoft, A, Stajich, JE, Hosaka, K, Sung, GH, Johnson, D, O'Rourke, B, Binder, M, Curtis, JM, Slot, JC, Wang, Z, Wilson, AW, Schüßler, A, Longcore, JE, O'Donnell, K, Mozley-Standridge, S, Porter, D, Letcher, PM, Powell, MJ, Taylor, JW, White, MM, Griffith, GW, Davies, DR, Sugiyama, J, Rossman, AY, Rogers, JD, Pfister, DH, Hewitt, D, Hansen, K, Hambleton, S, Shoemaker, RA, Kohlmeyer, J, Volkmann-Kohlmeyer, B, Spotts, RA, Serdani, M, Crous, PW, Hughes, KW, Matsuura, K, Langer, E, Langer, G, Untereiner, WA, Lücking, R, Büdel, B, Geiser, DM, Aptroot, A, Diederich, P, Schmitt, I, Schultz, M, Yahr, R, Hibbett, DS, Lutzoni, F, McLaughlin, DJ, Spatafora, JW & Vilgalys, R 2006, 'Reconstructing the early evolution of the fungi using a six gene phylogeny', Nature, vol. 443, no. 7113, pp. 818-822. https://doi.org/10.1038/nature05110

Reconstructing the early evolution of the fungi using a six gene phylogeny. / James, T.Y.; Kauff, F.; Schoch, C.L.; Matheny, P.B.; Hofstetter, V.; Cox, C.J.; Celio, G.; Gueidan, C.; Fraker, E.; Miadlikowska, J.; Lumbsch, H.T.; Rauhut, A.; Reeb, V.; Arnold, A.E.; Amtoft, A.; Stajich, J.E.; Hosaka, K.; Sung, G.H.; Johnson, D.; O'Rourke, B.; Binder, M.; Curtis, J.M.; Slot, J.C.; Wang, Z.; Wilson, A.W.; Schüßler, A.; Longcore, J.E.; O'Donnell, K.; Mozley-Standridge, S.; Porter, D.; Letcher, P.M.; Powell, M.J.; Taylor, J.W.; White, M.M.; Griffith, G.W.; Davies, D.R.; Sugiyama, J.; Rossman, A.Y.; Rogers, J.D.; Pfister, D.H.; Hewitt, D.; Hansen, K.; Hambleton, S.; Shoemaker, R.A.; Kohlmeyer, J.; Volkmann-Kohlmeyer, B.; Spotts, R.A.; Serdani, M.; Crous, P.W.; Hughes, K.W.; Matsuura, K.; Langer, E.; Langer, G.; Untereiner, W.A.; Lücking, R.; Büdel, B.; Geiser, D.M.; Aptroot, A.; Diederich, P.; Schmitt, I.; Schultz, M.; Yahr, R.; Hibbett, D.S.; Lutzoni, F.; McLaughlin, D.J.; Spatafora, J.W.; Vilgalys, R.

In: Nature, Vol. 443, No. 7113, 2006, p. 818-822.

Research output: Contribution to journal › Article › Academic › peer-review

TY - JOUR

T1 - Reconstructing the early evolution of the fungi using a six gene phylogeny

AU - James, T.Y.

AU - Kauff, F.

AU - Schoch, C.L.

AU - Matheny, P.B.

AU - Hofstetter, V.

AU - Cox, C.J.

AU - Celio, G.

AU - Gueidan, C.

AU - Fraker, E.

AU - Miadlikowska, J.

AU - Lumbsch, H.T.

AU - Rauhut, A.

AU - Reeb, V.

AU - Arnold, A.E.

AU - Amtoft, A.

AU - Stajich, J.E.

AU - Hosaka, K.

AU - Sung, G.H.

AU - Johnson, D.

AU - O'Rourke, B.

AU - Binder, M.

AU - Curtis, J.M.

AU - Slot, J.C.

AU - Wang, Z.

AU - Wilson, A.W.

AU - Schüßler, A.

AU - Longcore, J.E.

AU - O'Donnell, K.

AU - Mozley-Standridge, S.

AU - Porter, D.

AU - Letcher, P.M.

AU - Powell, M.J.

AU - Taylor, J.W.

AU - White, M.M.

AU - Griffith, G.W.

AU - Davies, D.R.

AU - Sugiyama, J.

AU - Rossman, A.Y.

AU - Rogers, J.D.

AU - Pfister, D.H.

AU - Hewitt, D.

AU - Hansen, K.

AU - Hambleton, S.

AU - Shoemaker, R.A.

AU - Kohlmeyer, J.

AU - Volkmann-Kohlmeyer, B.

AU - Spotts, R.A.

AU - Serdani, M.

AU - Crous, P.W.

AU - Hughes, K.W.

AU - Matsuura, K.

AU - Langer, E.

AU - Langer, G.

AU - Untereiner, W.A.

AU - Lücking, R.

AU - Büdel, B.

AU - Geiser, D.M.

AU - Aptroot, A.

AU - Diederich, P.

AU - Schmitt, I.

AU - Schultz, M.

AU - Yahr, R.

AU - Hibbett, D.S.

AU - Lutzoni, F.

AU - McLaughlin, D.J.

AU - Spatafora, J.W.

AU - Vilgalys, R.

PY - 2006

Y1 - 2006

N2 - The ancestors of fungi are believed to be simple aquatic forms with flagellated spores, similar to members of the extant phylum Chytridiomycota (chytrids). Current classifications assume that chytrids form an early-diverging clade within the kingdom Fungi and imply a single loss of the spore flagellum, leading to the diversification of terrestrial fungi. Here we develop phylogenetic hypotheses for Fungi using data from six gene regions and nearly 200 species. Our results indicate that there may have been at least four independent losses of the flagellum in the kingdom Fungi. These losses of swimming spores coincided with the evolution of new mechanisms of spore dispersal, such as aerial dispersal in mycelial groups and polar tube eversion in the microsporidia (unicellular forms that lack mitochondria). The enigmatic microsporidia seem to be derived from an endoparasitic chytrid ancestor similar to Rozella allomycis, on the earliest diverging branch of the fungal phylogenetic tree

AB - The ancestors of fungi are believed to be simple aquatic forms with flagellated spores, similar to members of the extant phylum Chytridiomycota (chytrids). Current classifications assume that chytrids form an early-diverging clade within the kingdom Fungi and imply a single loss of the spore flagellum, leading to the diversification of terrestrial fungi. Here we develop phylogenetic hypotheses for Fungi using data from six gene regions and nearly 200 species. Our results indicate that there may have been at least four independent losses of the flagellum in the kingdom Fungi. These losses of swimming spores coincided with the evolution of new mechanisms of spore dispersal, such as aerial dispersal in mycelial groups and polar tube eversion in the microsporidia (unicellular forms that lack mitochondria). The enigmatic microsporidia seem to be derived from an endoparasitic chytrid ancestor similar to Rozella allomycis, on the earliest diverging branch of the fungal phylogenetic tree

KW - arbuscular mycorrhizal fungi

KW - molecular phylogeny

KW - maximum-likelihood

KW - land plants

KW - tree

KW - microsporidia

KW - sequences

KW - animals

KW - chytridiomycota

KW - glomeromycota

U2 - 10.1038/nature05110

DO - 10.1038/nature05110

M3 - Article

VL - 443

SP - 818

EP - 822

JO - Nature

JF - Nature

SN - 0028-0836

IS - 7113

ER -