Quantitative Proteomic Analysis of Sulfolobus solfataricus Membrane Proteins

T.K. Pham, P. Sierocinski, J. van der Oost, P.C. Wright

Research output: Contribution to journalArticleAcademicpeer-review

20 Citations (Scopus)

Abstract

A quantitative proteomic analysis of the membrane of the archaeon Sulfolobus solfataricus P2 using iTRAQ was successfully demonstrated in this technical note. The estimated number of membrane proteins of this organism is 883 (predicted based on Gravy score), corresponding to 30 % of the total number of proteins. Using a modified iTRAQ protocol for membrane protein analysis, of the 284 proteins detected, 246 proteins were identified as membrane proteins, whilst using an original iTRAQ protocol, 147 proteins were detected with only 133 proteins being identified as membrane proteins. Furthermore, 97.2% of proteins identified in the modified protocol contained more than 2 distinct peptides compared to the original workflow. The successful application of this modified protocol offers a potential technique for quantitatively analyzing membrane-associated proteomes of organisms in the archaeal kingdom. The combination of 3 different iTRAQ experiments resulted in the detection of 395 proteins (>/= 2 distinct peptides) of which 373 had predicted membrane properties. Approximately 20% of the quantified proteins were observed to exhibit >/= 1.5 fold differential expression at temperatures well below the optimum for growth
Original languageEnglish
Pages (from-to)1165-1172
Number of pages8
JournalJournal of Proteome Research
Volume9
Issue number2
DOIs
Publication statusPublished - 2010

Keywords

  • 2-dimensional gel-electrophoresis
  • mass-spectrometry
  • halophilic archaeon
  • signal peptides
  • isobaric tags
  • p2 proteome
  • metabolism
  • genome
  • identification
  • organisms

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