Python scripts to access ArLV1 reads in SRAs of Arabidopsis accessions

René A.A. van der Vlugt; Ava Verhoeven; Karen J. Kloth; Anne Kupczok; Geert H. Oymans; Janna Damen; Karin Rijnsburger; Zhang Jiang; Cas Deelen; Rashmi Sasidharan; Martijn van Zanten

doi:10.5281/zenodo.6834313

Python scripts to access ArLV1 reads in SRAs of Arabidopsis accessions

René A.A. van der Vlugt^*, Ava Verhoeven, Karen J. Kloth, Anne Kupczok, Geert H. Oymans, Janna Damen, Karin Rijnsburger, Zhang Jiang, Cas Deelen, Rashmi Sasidharan, Martijn van Zanten

^*Corresponding author for this work

Research output: Non-textual form › Software

Abstract

Original language	English
Publisher	Zenodo
Media of output	Online
DOIs	https://doi.org/10.5281/zenodo.6834313
Publication status	Published - 14 Jul 2022

Keywords

Arabidopsis latent virus 1 (ArLV1)
Arabidopsis thaliana
comovirus
drought resilience
RNA sequencing
sequence read archives

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10.5281/zenodo.6834313Licence: CC BY

1 Article

Arabidopsis latent virus 1, a comovirus widely spread in Arabidopsis thaliana collections
Verhoeven, A., Kloth, K. J., Kupczok, A., Oymans, G. H., Damen, J., Rijnsburger, K., Jiang, Z., Deelen, C., Sasidharan, R., van Zanten, M. & van der Vlugt, R. A. A., Feb 2023, In: New Phytologist. 237, 4, p. 1146-1153
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
10 Citations (Scopus)

Cite this

@misc{0675ea050fd5454b95b09b2c1cd03326,

title = "Python scripts to access ArLV1 reads in SRAs of Arabidopsis accessions",

keywords = "Arabidopsis latent virus 1 (ArLV1), Arabidopsis thaliana, comovirus, drought resilience, RNA sequencing, sequence read archives",

author = "{van der Vlugt}, {Ren{\'e} A.A.} and Ava Verhoeven and Kloth, {Karen J.} and Anne Kupczok and Oymans, {Geert H.} and Janna Damen and Karin Rijnsburger and Zhang Jiang and Cas Deelen and Rashmi Sasidharan and {van Zanten}, Martijn",

note = "Publisher Copyright: {\textcopyright} 2022 The Authors. New Phytologist {\textcopyright} 2022 New Phytologist Foundation.",

year = "2022",

month = jul,

day = "14",

doi = "10.5281/zenodo.6834313",

language = "English",

volume = "237",

publisher = "Zenodo",

address = "Switzerland",

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TY - ADVS

T1 - Python scripts to access ArLV1 reads in SRAs of Arabidopsis accessions

AU - van der Vlugt, René A.A.

AU - Verhoeven, Ava

AU - Kloth, Karen J.

AU - Kupczok, Anne

AU - Oymans, Geert H.

AU - Damen, Janna

AU - Rijnsburger, Karin

AU - Jiang, Zhang

AU - Deelen, Cas

AU - Sasidharan, Rashmi

AU - van Zanten, Martijn

PY - 2022/7/14

Y1 - 2022/7/14

KW - Arabidopsis latent virus 1 (ArLV1)

KW - Arabidopsis thaliana

KW - comovirus

KW - drought resilience

KW - RNA sequencing

KW - sequence read archives

U2 - 10.5281/zenodo.6834313

DO - 10.5281/zenodo.6834313

M3 - Software

VL - 237

PB - Zenodo

ER -

Python scripts to access ArLV1 reads in SRAs of Arabidopsis accessions

Abstract

Keywords

Access to Document

Research output

Arabidopsis latent virus 1, a comovirus widely spread in Arabidopsis thaliana collections

Cite this