Preparing a Large-Scale Dataset for HRMS/MS-Based Foundation Models: A New Era Beyond Annotated Data?

Original language	English
Number of pages	1
Publication status	Published - 22 Jun 2025
Event	Metabolomics 2025 - Prague, Czech Republic Duration: 22 Jun 2025 → 26 Jun 2025

Conference/symposium

Conference/symposium	Metabolomics 2025
Country/Territory	Czech Republic
City	Prague
Period	22/06/25 → 26/06/25

Access to Document

• https://edepot.wur.nl/707421Licence: Publisher

Research output

Research output per year 2025 2025 2025

• 1 Pamphlet

Research output per year

Research output per year

• Progress report KB54 - end-year 2025 [Sustainable Nutrition & Health]: Description of Deliverable D2: Dataset of 36K-48K measurements

  Padilla Gonzalez, G. F., Dec 2025, 1 p. Wageningen University & Research.

  Research output: Other contribution › Pamphlet

  Open Access

Projects

Projects per year 2025 2025 2028

• 1 Active

Projects per year

• New horizons of AI in HRMS analysis (KB-54-000-007)

  Padilla Gonzalez, F. (Project Leader)

  1/01/25 → 31/12/28

  Project: LVVN project

  • Chromatography 100%
  • Resolution (Mass Spectrometry) 100%
  • Liquid Chromatography 100%
  • High Resolution Mass Spectrometry (HRMS) 100%
  • Privacy 14%

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Padilla Gonzalez, G. F., Carnoli, A. J., van den Bulk, L. M., Korporaal, D., Alewijn, M., Blokland, M. H., & van der Velden, B. H. M. (2025). Preparing a Large-Scale Dataset for HRMS/MS-Based Foundation Models: A New Era Beyond Annotated Data?. Poster session presented at Metabolomics 2025, Prague, Czech Republic. https://edepot.wur.nl/707421

Padilla Gonzalez, G.F. ; Carnoli, A.J. ; van den Bulk, L.M. et al. / Preparing a Large-Scale Dataset for HRMS/MS-Based Foundation Models: A New Era Beyond Annotated Data?. Poster session presented at Metabolomics 2025, Prague, Czech Republic.1 p.

@conference{961bc664b732409d860c96d29fdb6adf,

title = "Preparing a Large-Scale Dataset for HRMS/MS-Based Foundation Models: A New Era Beyond Annotated Data?",

author = "\{Padilla Gonzalez\}, G.F. and A.J. Carnoli and \{van den Bulk\}, L.M. and D. Korporaal and M. Alewijn and M.H. Blokland and \{van der Velden\}, B.H.M.",

year = "2025",

month = jun,

day = "22",

language = "English",

note = "Metabolomics 2025 ; Conference date: 22-06-2025 Through 26-06-2025",

}

Padilla Gonzalez, GF, Carnoli, AJ, van den Bulk, LM, Korporaal, D, Alewijn, M, Blokland, MH & van der Velden, BHM 2025, 'Preparing a Large-Scale Dataset for HRMS/MS-Based Foundation Models: A New Era Beyond Annotated Data?', Metabolomics 2025, Prague, Czech Republic, 22/06/25 - 26/06/25. <https://edepot.wur.nl/707421>

Preparing a Large-Scale Dataset for HRMS/MS-Based Foundation Models: A New Era Beyond Annotated Data? / Padilla Gonzalez, G.F.; Carnoli, A.J.; van den Bulk, L.M. et al.
2025. Poster session presented at Metabolomics 2025, Prague, Czech Republic.

Research output: Contribution to conference › Poster › Academic

TY - CONF

T1 - Preparing a Large-Scale Dataset for HRMS/MS-Based Foundation Models: A New Era Beyond Annotated Data?

AU - Padilla Gonzalez, G.F.

AU - Carnoli, A.J.

AU - van den Bulk, L.M.

AU - Korporaal, D.

AU - Alewijn, M.

AU - Blokland, M.H.

AU - van der Velden, B.H.M.

PY - 2025/6/22

Y1 - 2025/6/22

M3 - Poster

T2 - Metabolomics 2025

Y2 - 22 June 2025 through 26 June 2025

ER -

Padilla Gonzalez GF, Carnoli AJ, van den Bulk LM, Korporaal D, Alewijn M, Blokland MH et al.. Preparing a Large-Scale Dataset for HRMS/MS-Based Foundation Models: A New Era Beyond Annotated Data?. 2025. Poster session presented at Metabolomics 2025, Prague, Czech Republic.