plantismash/plantismash: plantiSMASH 2.0-beta4

E. del Pup

doi:10.5281/zenodo.15412176

plantismash/plantismash: plantiSMASH 2.0-beta4

E. del Pup

Research output: Non-textual form › Software

Abstract

Major updates
Codebase updated to python 3
Detection rules updated, including styles
Versioning and HTML formatting updated
Cyclopeptide detection rule adjusted

What's Changed
set clusterblast and knownclusterblast to false by default by @adraismawur in https://github.com/plantismash/plantismash/pull/22
Py3 update by @elenadelpup in https://github.com/plantismash/plantismash/pull/28

New Contributors
@adraismawur made their first contribution in https://github.com/plantismash/plantismash/pull/22
Full Changelog: https://github.com/plantismash/plantismash/compare/2.0-beta3...2.0-beta4

Original language	English
Publisher	Wageningen University & Research
DOIs	https://doi.org/10.5281/zenodo.15412176
Publication status	Published - 14 May 2025

Access to Document

10.5281/zenodo.15412176Licence: GNU GPL

PlantiSMASH data for the TFBS detection module
Del Pup, E. (Creator) & Augustijn, H. (Creator), Wageningen University & Research, 24 Sept 2025
DOI: 10.5281/zenodo.16926249
Dataset

Cite this

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title = "plantismash/plantismash: plantiSMASH 2.0-beta4",

abstract = "Major updates Codebase updated to python 3 Detection rules updated, including styles Versioning and HTML formatting updated Cyclopeptide detection rule adjusted What's Changed set clusterblast and knownclusterblast to false by default by @adraismawur in https://github.com/plantismash/plantismash/pull/22 Py3 update by @elenadelpup in https://github.com/plantismash/plantismash/pull/28 New Contributors @adraismawur made their first contribution in https://github.com/plantismash/plantismash/pull/22 Full Changelog: https://github.com/plantismash/plantismash/compare/2.0-beta3...2.0-beta4",

author = "\{del Pup\}, E.",

year = "2025",

month = may,

day = "14",

doi = "10.5281/zenodo.15412176",

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AU - del Pup, E.

PY - 2025/5/14

Y1 - 2025/5/14

N2 - Major updates Codebase updated to python 3 Detection rules updated, including styles Versioning and HTML formatting updated Cyclopeptide detection rule adjusted What's Changed set clusterblast and knownclusterblast to false by default by @adraismawur in https://github.com/plantismash/plantismash/pull/22 Py3 update by @elenadelpup in https://github.com/plantismash/plantismash/pull/28 New Contributors @adraismawur made their first contribution in https://github.com/plantismash/plantismash/pull/22 Full Changelog: https://github.com/plantismash/plantismash/compare/2.0-beta3...2.0-beta4

AB - Major updates Codebase updated to python 3 Detection rules updated, including styles Versioning and HTML formatting updated Cyclopeptide detection rule adjusted What's Changed set clusterblast and knownclusterblast to false by default by @adraismawur in https://github.com/plantismash/plantismash/pull/22 Py3 update by @elenadelpup in https://github.com/plantismash/plantismash/pull/28 New Contributors @adraismawur made their first contribution in https://github.com/plantismash/plantismash/pull/22 Full Changelog: https://github.com/plantismash/plantismash/compare/2.0-beta3...2.0-beta4

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M3 - Software

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ER -

plantismash/plantismash: plantiSMASH 2.0-beta4

Abstract

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Datasets

PlantiSMASH data for the TFBS detection module

Cite this