PanTools

H. Nijveen; S. Smit; M.H. Medema; D. de Ridder; A.D.J. van Dijk; E.M. Jonkheer; J.J.J. van der Hooft; T. van Lankveld; M. Moed; F.J.M. van Workum

PanTools

H. Nijveen, S. Smit, M.H. Medema, D. de Ridder, A.D.J. van Dijk, E.M. Jonkheer, J.J.J. van der Hooft, T. van Lankveld, M. Moed, F.J.M. van Workum

Research output: Non-textual form › Software

Abstract

PanTools is a pangenomic toolkit for comparative analysis of large number of genomes. It is developed in the Bioinformatics Group of Wageningen University, the Netherlands. Please cite the relevant publication(s) from the list of publications if you use PanTools in your research.

Original language	English
Place of Publication	Wageningen
Publisher	Wageningen University & Research
Media of output	Online
Publication status	Published - 2019

Access to Document

https://git.wur.nl/bioinformatics/pantoolsLicence: GNU GPL

3 Article

The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool
Jonkheer, E. M., Brankovics, B., Houwers, I. M., van der Wolf, J. M., Bonants, P. J. M., Vreeburg, R. A. M., Bollema, R., de Haan, J. R., Berke, L., Smit, S., de Ridder, D. & van der Lee, T. A. J., 14 Apr 2021, In: BMC Genomics. 22, 1, 265.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
30 Citations (Scopus)
Efficient inference of homologs in large eukaryotic pan-proteomes
Sheikhizadeh Anari, S., de Ridder, D., Schranz, M. E. & Smit, S., 26 Sept 2018, In: BMC Bioinformatics. 19, 1, 11 p.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
12 Citations (Scopus)
PanTools: representation, storage and exploration of pan-genomic data
Sheikhizadeh Anari, S., Schranz, M. E., Akdel, M., de Ridder, D. & Smit, S., 2016, In: Bioinformatics. 32, 17, p. i487-i493
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
39 Citations (Scopus)

Cite this

@misc{d837e4c898e04555ac670e9640905892,

title = "PanTools",

abstract = "PanTools is a pangenomic toolkit for comparative analysis of large number of genomes. It is developed in the Bioinformatics Group of Wageningen University, the Netherlands. Please cite the relevant publication(s) from the list of publications if you use PanTools in your research.",

author = "H. Nijveen and S. Smit and M.H. Medema and {de Ridder}, D. and {van Dijk}, A.D.J. and E.M. Jonkheer and {van der Hooft}, J.J.J. and {van Lankveld}, T. and M. Moed and {van Workum}, F.J.M.",

year = "2019",

language = "English",

publisher = "Wageningen University & Research",

address = "Netherlands",

}

TY - ADVS

T1 - PanTools

AU - Nijveen, H.

AU - Smit, S.

AU - Medema, M.H.

AU - de Ridder, D.

AU - van Dijk, A.D.J.

AU - Jonkheer, E.M.

AU - van der Hooft, J.J.J.

AU - van Lankveld, T.

AU - Moed, M.

AU - van Workum, F.J.M.

PY - 2019

Y1 - 2019

N2 - PanTools is a pangenomic toolkit for comparative analysis of large number of genomes. It is developed in the Bioinformatics Group of Wageningen University, the Netherlands. Please cite the relevant publication(s) from the list of publications if you use PanTools in your research.

AB - PanTools is a pangenomic toolkit for comparative analysis of large number of genomes. It is developed in the Bioinformatics Group of Wageningen University, the Netherlands. Please cite the relevant publication(s) from the list of publications if you use PanTools in your research.

M3 - Software

PB - Wageningen University & Research

CY - Wageningen

ER -

PanTools

Abstract

Access to Document

Fingerprint

Research output

The Pectobacterium pangenome, with a focus on Pectobacterium brasiliense, shows a robust core and extensive exchange of genes from a shared gene pool

Efficient inference of homologs in large eukaryotic pan-proteomes

PanTools: representation, storage and exploration of pan-genomic data

Cite this