Multi-netclust: an efficient tool for finding connected clusters in multi-parametric networks

A. Kuzniar, S. Dhir, H. Nijveen, S. Pongor, J.A.M. Leunissen

Research output: Contribution to journalArticleAcademicpeer-review

2 Citations (Scopus)

Abstract

Multi-netclust is a simple tool that allows users to extract connected clusters of data represented by different networks given in the form of matrices. The tool uses user-defined threshold values to combine the matrices, and uses a straightforward, memory-efficient graph algorithm to find clusters that are connected in all or in either of the networks. The tool is written in C/C++ and is available either as a form-based or as a command-line-based program running on Linux platforms. The algorithm is fast, processing a network of > 106 nodes and 108 edges takes only a few minutes on an ordinary computer.
Original languageEnglish
Pages (from-to)2482-2483
JournalBioinformatics
Volume26
Issue number19
DOIs
Publication statusPublished - 2010

Keywords

  • protein
  • algorithm

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