Modelling the dynamics of viral suppressors of RNA silencing

M.A.C. Groenenboom

Research output: Contribution to journalArticleAcademicpeer-review

7 Citations (Scopus)

Abstract

Virus infection in plants is limited by RNA silencing. In turn, viruses can counter RNA silencing with silencing suppressors. Viral suppressors of RNA silencing have been shown to play a role in symptom development in plants. We here study four different strategies employed by silencing suppressors: small interfering RNA (siRNA) binding, double-strand RNA (dsRNA) binding and degrading or inactivating Argonaute. We study the effect of the suppressors on viral accumulation within the cell as well as its spread on a tissue with mathematical and computational models. We find that suppressors which target Argonaute are very effective in a single cell, but that targeting dsRNA or siRNA is much more effective at the tissue level. Although targeting Argonaute can be beneficial for viral spread, it can also cause hindrance in some cases owing to raised levels of siRNAs that can spread to other cells.
Original languageEnglish
Pages (from-to)436-447
JournalJournal of the Royal Society, Interface
Volume9
Issue number68
DOIs
Publication statusPublished - 2012

Keywords

  • small interfering rnas
  • virus
  • argonaute1
  • risc
  • degradation
  • biogenesis
  • proteins
  • cleavage
  • defense
  • p0

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