MEMOTE for standardized genome-scale metabolic model testing

Christian Lieven; Moritz E. Beber; Brett G. Olivier; Frank T. Bergmann; Meric Ataman; Parizad Babaei; Jennifer A. Bartell; Lars M. Blank; Siddharth Chauhan; Kevin Correia; Christian Diener; Andreas Dräger; Birgitta E. Ebert; Janaka N. Edirisinghe; José P. Faria; Adam M. Feist; Georgios Fengos; Ronan M.T. Fleming; Beatriz García-Jiménez; Vassily Hatzimanikatis; Wout van Helvoirt; Christopher S. Henry; Henning Hermjakob; Markus J. Herrgård; Ali Kaafarani; Hyun Uk Kim; Zachary King; Steffen Klamt; Edda Klipp; Jasper J. Koehorst; Matthias König; Meiyappan Lakshmanan; Dong Yup Lee; Sang Yup Lee; Sunjae Lee; Nathan E. Lewis; Filipe Liu; Hongwu Ma; Daniel Machado; Radhakrishnan Mahadevan; Paulo Maia; Adil Mardinoglu; Gregory L. Medlock; Jonathan M. Monk; Jens Nielsen; Lars Keld Nielsen; Juan Nogales; Intawat Nookaew; Bernhard O. Palsson; Jason A. Papin; Kiran R. Patil; Mark Poolman; Nathan D. Price; Osbaldo Resendis-Antonio; Anne Richelle; Isabel Rocha; Benjamín J. Sánchez; Peter J. Schaap; Rahuman S. Malik Sheriff; Saeed Shoaie; Nikolaus Sonnenschein; Bas Teusink; Paulo Vilaça; Jon Olav Vik; Judith A.H. Wodke; Joana C. Xavier; Qianqian Yuan; Maksim Zakhartsev; Cheng Zhang

doi:10.1038/s41587-020-0446-y

MEMOTE for standardized genome-scale metabolic model testing

Christian Lieven, Moritz E. Beber, Brett G. Olivier, Frank T. Bergmann, Meric Ataman, Parizad Babaei, Jennifer A. Bartell, Lars M. Blank, Siddharth Chauhan, Kevin Correia, Christian Diener, Andreas Dräger, Birgitta E. Ebert, Janaka N. Edirisinghe, José P. Faria, Adam M. Feist, Georgios Fengos, Ronan M.T. Fleming, Beatriz García-Jiménez, Vassily HatzimanikatisWout van Helvoirt, Christopher S. Henry, Henning Hermjakob, Markus J. Herrgård, Ali Kaafarani, Hyun Uk Kim, Zachary King, Steffen Klamt, Edda Klipp, Jasper J. Koehorst, Matthias König, Meiyappan Lakshmanan, Dong Yup Lee, Sang Yup Lee, Sunjae Lee, Nathan E. Lewis, Filipe Liu, Hongwu Ma, Daniel Machado, Radhakrishnan Mahadevan, Paulo Maia, Adil Mardinoglu, Gregory L. Medlock, Jonathan M. Monk, Jens Nielsen, Lars Keld Nielsen, Juan Nogales, Intawat Nookaew, Bernhard O. Palsson, Jason A. Papin, Kiran R. Patil, Mark Poolman, Nathan D. Price, Osbaldo Resendis-Antonio, Anne Richelle, Isabel Rocha, Benjamín J. Sánchez, Peter J. Schaap, Rahuman S. Malik Sheriff, Saeed Shoaie, Nikolaus Sonnenschein^*, Bas Teusink, Paulo Vilaça, Jon Olav Vik, Judith A.H. Wodke, Joana C. Xavier, Qianqian Yuan, Maksim Zakhartsev, Cheng Zhang

^*Corresponding author for this work

Research output: Contribution to journal › Article › Academic › peer-review

211 Citations (Scopus)

Original language	English
Pages (from-to)	272-276
Number of pages	5
Journal	Nature Biotechnology
Volume	38
Issue number	3
DOIs	https://doi.org/10.1038/s41587-020-0446-y
Publication status	Published - 19 Mar 2020

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https://edepot.wur.nl/518864Licence: CC BY

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1 Comment/Letter to the editor

Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing
Lieven, C., Beber, M. E., Olivier, B. G., Bergmann, F. T., Ataman, M., Babaei, P., Bartell, J. A., Blank, L. M., Chauhan, S., Correia, K., Diener, C., Dräger, A., Ebert, B. E., Edirisinghe, J. N., Faria, J. P., Feist, A. M., Fengos, G., Fleming, R. M. T., García-Jiménez, B., Hatzimanikatis, V., & 49 othersvan Helvoirt, W., Henry, C. S., Hermjakob, H., Herrgård, M. J., Kaafarani, A., Kim, H. U., King, Z., Klamt, S., Klipp, E., Koehorst, J. J., König, M., Lakshmanan, M., Lee, D. Y., Lee, S. Y., Lee, S., Lewis, N. E., Liu, F., Ma, H., Machado, D., Mahadevan, R., Maia, P., Mardinoglu, A., Medlock, G. L., Monk, J. M., Nielsen, J., Nielsen, L. K., Nogales, J., Nookaew, I., Palsson, B. O., Papin, J. A., Patil, K. R., Poolman, M., Price, N. D., Resendis-Antonio, O., Richelle, A., Rocha, I., Sánchez, B. J., Schaap, P. J., Malik Sheriff, R. S., Shoaie, S., Sonnenschein, N., Teusink, B., Vilaça, P., Vik, J. O., Wodke, J. A. H., Xavier, J. C., Yuan, Q., Zakhartsev, M. & Zhang, C., 19 Mar 2020, In: Nature Biotechnology. 38, 4, 1 p.
Research output: Contribution to journal › Comment/Letter to the editor › Academic

Open Access
4 Citations (Scopus)

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Lieven, C., Beber, M. E., Olivier, B. G., Bergmann, F. T., Ataman, M., Babaei, P., Bartell, J. A., Blank, L. M., Chauhan, S., Correia, K., Diener, C., Dräger, A., Ebert, B. E., Edirisinghe, J. N., Faria, J. P., Feist, A. M., Fengos, G., Fleming, R. M. T., García-Jiménez, B., ... Zhang, C. (2020). MEMOTE for standardized genome-scale metabolic model testing. Nature Biotechnology, 38(3), 272-276. https://doi.org/10.1038/s41587-020-0446-y

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author = "Christian Lieven and Beber, {Moritz E.} and Olivier, {Brett G.} and Bergmann, {Frank T.} and Meric Ataman and Parizad Babaei and Bartell, {Jennifer A.} and Blank, {Lars M.} and Siddharth Chauhan and Kevin Correia and Christian Diener and Andreas Dr{\"a}ger and Ebert, {Birgitta E.} and Edirisinghe, {Janaka N.} and Faria, {Jos{\'e} P.} and Feist, {Adam M.} and Georgios Fengos and Fleming, {Ronan M.T.} and Beatriz Garc{\'i}a-Jim{\'e}nez and Vassily Hatzimanikatis and {van Helvoirt}, Wout and Henry, {Christopher S.} and Henning Hermjakob and Herrg{\aa}rd, {Markus J.} and Ali Kaafarani and Kim, {Hyun Uk} and Zachary King and Steffen Klamt and Edda Klipp and Koehorst, {Jasper J.} and Matthias K{\"o}nig and Meiyappan Lakshmanan and Lee, {Dong Yup} and Lee, {Sang Yup} and Sunjae Lee and Lewis, {Nathan E.} and Filipe Liu and Hongwu Ma and Daniel Machado and Radhakrishnan Mahadevan and Paulo Maia and Adil Mardinoglu and Medlock, {Gregory L.} and Monk, {Jonathan M.} and Jens Nielsen and Nielsen, {Lars Keld} and Juan Nogales and Intawat Nookaew and Palsson, {Bernhard O.} and Papin, {Jason A.} and Patil, {Kiran R.} and Mark Poolman and Price, {Nathan D.} and Osbaldo Resendis-Antonio and Anne Richelle and Isabel Rocha and S{\'a}nchez, {Benjam{\'i}n J.} and Schaap, {Peter J.} and {Malik Sheriff}, {Rahuman S.} and Saeed Shoaie and Nikolaus Sonnenschein and Bas Teusink and Paulo Vila{\c c}a and Vik, {Jon Olav} and Wodke, {Judith A.H.} and Xavier, {Joana C.} and Qianqian Yuan and Maksim Zakhartsev and Cheng Zhang",

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Lieven, C, Beber, ME, Olivier, BG, Bergmann, FT, Ataman, M, Babaei, P, Bartell, JA, Blank, LM, Chauhan, S, Correia, K, Diener, C, Dräger, A, Ebert, BE, Edirisinghe, JN, Faria, JP, Feist, AM, Fengos, G, Fleming, RMT, García-Jiménez, B, Hatzimanikatis, V, van Helvoirt, W, Henry, CS, Hermjakob, H, Herrgård, MJ, Kaafarani, A, Kim, HU, King, Z, Klamt, S, Klipp, E, Koehorst, JJ, König, M, Lakshmanan, M, Lee, DY, Lee, SY, Lee, S, Lewis, NE, Liu, F, Ma, H, Machado, D, Mahadevan, R, Maia, P, Mardinoglu, A, Medlock, GL, Monk, JM, Nielsen, J, Nielsen, LK, Nogales, J, Nookaew, I, Palsson, BO, Papin, JA, Patil, KR, Poolman, M, Price, ND, Resendis-Antonio, O, Richelle, A, Rocha, I, Sánchez, BJ, Schaap, PJ, Malik Sheriff, RS, Shoaie, S, Sonnenschein, N, Teusink, B, Vilaça, P, Vik, JO, Wodke, JAH, Xavier, JC, Yuan, Q, Zakhartsev, M & Zhang, C 2020, 'MEMOTE for standardized genome-scale metabolic model testing', Nature Biotechnology, vol. 38, no. 3, pp. 272-276. https://doi.org/10.1038/s41587-020-0446-y

TY - JOUR

T1 - MEMOTE for standardized genome-scale metabolic model testing

AU - Lieven, Christian

AU - Beber, Moritz E.

AU - Olivier, Brett G.

AU - Bergmann, Frank T.

AU - Ataman, Meric

AU - Babaei, Parizad

AU - Bartell, Jennifer A.

AU - Blank, Lars M.

AU - Chauhan, Siddharth

AU - Correia, Kevin

AU - Diener, Christian

AU - Dräger, Andreas

AU - Ebert, Birgitta E.

AU - Edirisinghe, Janaka N.

AU - Faria, José P.

AU - Feist, Adam M.

AU - Fengos, Georgios

AU - Fleming, Ronan M.T.

AU - García-Jiménez, Beatriz

AU - Hatzimanikatis, Vassily

AU - van Helvoirt, Wout

AU - Henry, Christopher S.

AU - Hermjakob, Henning

AU - Herrgård, Markus J.

AU - Kaafarani, Ali

AU - Kim, Hyun Uk

AU - King, Zachary

AU - Klamt, Steffen

AU - Klipp, Edda

AU - Koehorst, Jasper J.

AU - König, Matthias

AU - Lakshmanan, Meiyappan

AU - Lee, Dong Yup

AU - Lee, Sang Yup

AU - Lee, Sunjae

AU - Lewis, Nathan E.

AU - Liu, Filipe

AU - Ma, Hongwu

AU - Machado, Daniel

AU - Mahadevan, Radhakrishnan

AU - Maia, Paulo

AU - Mardinoglu, Adil

AU - Medlock, Gregory L.

AU - Monk, Jonathan M.

AU - Nielsen, Jens

AU - Nielsen, Lars Keld

AU - Nogales, Juan

AU - Nookaew, Intawat

AU - Palsson, Bernhard O.

AU - Papin, Jason A.

AU - Patil, Kiran R.

AU - Poolman, Mark

AU - Price, Nathan D.

AU - Resendis-Antonio, Osbaldo

AU - Richelle, Anne

AU - Rocha, Isabel

AU - Sánchez, Benjamín J.

AU - Schaap, Peter J.

AU - Malik Sheriff, Rahuman S.

AU - Shoaie, Saeed

AU - Sonnenschein, Nikolaus

AU - Teusink, Bas

AU - Vilaça, Paulo

AU - Vik, Jon Olav

AU - Wodke, Judith A.H.

AU - Xavier, Joana C.

AU - Yuan, Qianqian

AU - Zakhartsev, Maksim

AU - Zhang, Cheng

PY - 2020/3/19

Y1 - 2020/3/19

U2 - 10.1038/s41587-020-0446-y

DO - 10.1038/s41587-020-0446-y

M3 - Article

C2 - 32123384

AN - SCOPUS:85081212273

SN - 1087-0156

VL - 38

SP - 272

EP - 276

JO - Nature Biotechnology

JF - Nature Biotechnology

IS - 3

ER -

MEMOTE for standardized genome-scale metabolic model testing

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Publisher Correction: MEMOTE for standardized genome-scale metabolic model testing

Cite this