Marker2sequence, mine your QTL regions for candidate genes

P.Y.F.R.P. Chibon; H. Schoof; R.G.F. Visser; H.J. Finkers

doi:10.1093/bioinformatics/bts298

Marker2sequence, mine your QTL regions for candidate genes

P.Y.F.R.P. Chibon
, H. Schoof
, R.G.F. Visser
, H.J. Finkers

Research output: Contribution to journal › Article › Academic › peer-review

9 Citations (Scopus)

Abstract

Marker2sequence (M2S) aims at mining quantitative trait loci (QTLs) for candidate genes. For each gene, within the QTL region, M2S uses data integration technology to integrate putative gene function with associated gene ontology terms, proteins, pathways and literature. As a typical QTL region easily contains several hundreds of genes, this gene list can then be further filtered using a keyword-based query on the aggregated annotations. M2S will help breeders to identify potential candidate genes for their traits of interest.

Original language	English
Pages (from-to)	1921-1922
Journal	Bioinformatics
Volume	28
Issue number	14
DOIs	https://doi.org/10.1093/bioinformatics/bts298
Publication status	Published - 2012

Keywords

genome sequence
tomato
web

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10.1093/bioinformatics/bts298

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Marker2sequence, mine your QTL regions for candidate genes

Abstract

Keywords

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