Marker2sequence, mine your QTL regions for candidate genes

P.Y.F.R.P. Chibon, H. Schoof, R.G.F. Visser, H.J. Finkers

Research output: Contribution to journalArticleAcademicpeer-review

8 Citations (Scopus)

Abstract

Marker2sequence (M2S) aims at mining quantitative trait loci (QTLs) for candidate genes. For each gene, within the QTL region, M2S uses data integration technology to integrate putative gene function with associated gene ontology terms, proteins, pathways and literature. As a typical QTL region easily contains several hundreds of genes, this gene list can then be further filtered using a keyword-based query on the aggregated annotations. M2S will help breeders to identify potential candidate genes for their traits of interest.
Original languageEnglish
Pages (from-to)1921-1922
JournalBioinformatics
Volume28
Issue number14
DOIs
Publication statusPublished - 2012

Keywords

  • genome sequence
  • tomato
  • web

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