Mapping genetic diversity in European gene banks: preliminary results on chickens for the validation of IMAGE001 array

M. Tixier-Boichard; N. Peynot; D. Duclos; S. Weigend; L. Monteagudo; A. Martinez Martinez; J.V. Delgado; R. Gonzalez Prendes; R. Crooijmans; G. Restoux

doi:10.3920/978-90-8686-940-4_245

Mapping genetic diversity in European gene banks: preliminary results on chickens for the validation of IMAGE001 array

M. Tixier-Boichard^*, N. Peynot, D. Duclos, S. Weigend, L. Monteagudo, A. Martinez Martinez, J.V. Delgado, R. Gonzalez Prendes, R. Crooijmans, G. Restoux

^*Corresponding author for this work

Research output: Chapter in Book/Report/Conference proceeding › Conference paper › Academic

Abstract

Gene banks are a component of a national strategy for the preservation of genetic diversity. Gene bank managers need to have a global and comparable picture of the diversity in their collections in order to rationalize them. Facing a diversity of molecular tools is a difficulty. The IMAGE H2020 project aimed at developing a low cost 60k SNP array to facilitate the mapping of diversity in gene banks. The first test of this array was performed for chicken with 204 samples from 18 local breeds and nine experimental lines provided by Germany, France and Spain. The MAF across population was 0.34, showing that this tool is useful over a range of populations. The principal component analysis and the Neighbor-joining tree showed that local breeds did not cluster according to country and were generally homogenous. Comparison with on-farm populations remains to be done to assess the value of the gene bank collections.

Original language	English
Title of host publication	Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP)
Subtitle of host publication	Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges
Editors	R.F. Veerkamp, Y. de Haas
Place of Publication	Wageningen
Publisher	Wageningen Academic Publishers
Pages	1037-1040
ISBN (Electronic)	9789086869404
DOIs	https://doi.org/10.3920/978-90-8686-940-4_245
Publication status	Published - 2022
Event	World Congress on Genetics Applied to Livestock Production: WCGALP 2022 - Rotterdam, Netherlands Duration: 3 Jul 2022 → 8 Jul 2022

Conference/symposium

Conference/symposium	World Congress on Genetics Applied to Livestock Production: WCGALP 2022
Country/Territory	Netherlands
City	Rotterdam
Period	3/07/22 → 8/07/22

Access to Document

10.3920/978-90-8686-940-4_245Licence: CC BY

https://edepot.wur.nl/588153Licence: CC BY

Cite this

Tixier-Boichard, M., Peynot, N., Duclos, D., Weigend, S., Monteagudo, L., Martinez Martinez, A., Delgado, J. V., Gonzalez Prendes, R., Crooijmans, R., & Restoux, G. (2022). Mapping genetic diversity in European gene banks: preliminary results on chickens for the validation of IMAGE001 array. In R. F. Veerkamp, & Y. de Haas (Eds.), Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP): Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges (pp. 1037-1040). Article 245 Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-940-4_245

Tixier-Boichard, M. ; Peynot, N. ; Duclos, D. et al. / Mapping genetic diversity in European gene banks: preliminary results on chickens for the validation of IMAGE001 array. Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP): Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges. editor / R.F. Veerkamp ; Y. de Haas. Wageningen : Wageningen Academic Publishers, 2022. pp. 1037-1040

@inproceedings{7570f8eff30f42ac8e7c63ca696419f5,

title = "Mapping genetic diversity in European gene banks: preliminary results on chickens for the validation of IMAGE001 array",

abstract = "Gene banks are a component of a national strategy for the preservation of genetic diversity. Gene bank managers need to have a global and comparable picture of the diversity in their collections in order to rationalize them. Facing a diversity of molecular tools is a difficulty. The IMAGE H2020 project aimed at developing a low cost 60k SNP array to facilitate the mapping of diversity in gene banks. The first test of this array was performed for chicken with 204 samples from 18 local breeds and nine experimental lines provided by Germany, France and Spain. The MAF across population was 0.34, showing that this tool is useful over a range of populations. The principal component analysis and the Neighbor-joining tree showed that local breeds did not cluster according to country and were generally homogenous. Comparison with on-farm populations remains to be done to assess the value of the gene bank collections.",

author = "M. Tixier-Boichard and N. Peynot and D. Duclos and S. Weigend and L. Monteagudo and {Martinez Martinez}, A. and J.V. Delgado and {Gonzalez Prendes}, R. and R. Crooijmans and G. Restoux",

year = "2022",

doi = "10.3920/978-90-8686-940-4_245",

language = "English",

pages = "1037--1040",

editor = "R.F. Veerkamp and {de Haas}, Y.",

booktitle = "Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP)",

publisher = "Wageningen Academic Publishers",

address = "Netherlands",

note = "World Congress on Genetics Applied to Livestock Production: WCGALP 2022 ; Conference date: 03-07-2022 Through 08-07-2022",

}

Tixier-Boichard, M, Peynot, N, Duclos, D, Weigend, S, Monteagudo, L, Martinez Martinez, A, Delgado, JV, Gonzalez Prendes, R, Crooijmans, R & Restoux, G 2022, Mapping genetic diversity in European gene banks: preliminary results on chickens for the validation of IMAGE001 array. in RF Veerkamp & Y de Haas (eds), Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP): Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges., 245, Wageningen Academic Publishers, Wageningen, pp. 1037-1040, World Congress on Genetics Applied to Livestock Production: WCGALP 2022, Rotterdam, Netherlands, 3/07/22. https://doi.org/10.3920/978-90-8686-940-4_245

Mapping genetic diversity in European gene banks: preliminary results on chickens for the validation of IMAGE001 array. / Tixier-Boichard, M.; Peynot, N.; Duclos, D. et al.
Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP): Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges. ed. / R.F. Veerkamp; Y. de Haas. Wageningen: Wageningen Academic Publishers, 2022. p. 1037-1040 245.

Research output: Chapter in Book/Report/Conference proceeding › Conference paper › Academic

TY - GEN

T1 - Mapping genetic diversity in European gene banks: preliminary results on chickens for the validation of IMAGE001 array

AU - Tixier-Boichard, M.

AU - Peynot, N.

AU - Duclos, D.

AU - Weigend, S.

AU - Monteagudo, L.

AU - Martinez Martinez, A.

AU - Delgado, J.V.

AU - Gonzalez Prendes, R.

AU - Crooijmans, R.

AU - Restoux, G.

PY - 2022

Y1 - 2022

N2 - Gene banks are a component of a national strategy for the preservation of genetic diversity. Gene bank managers need to have a global and comparable picture of the diversity in their collections in order to rationalize them. Facing a diversity of molecular tools is a difficulty. The IMAGE H2020 project aimed at developing a low cost 60k SNP array to facilitate the mapping of diversity in gene banks. The first test of this array was performed for chicken with 204 samples from 18 local breeds and nine experimental lines provided by Germany, France and Spain. The MAF across population was 0.34, showing that this tool is useful over a range of populations. The principal component analysis and the Neighbor-joining tree showed that local breeds did not cluster according to country and were generally homogenous. Comparison with on-farm populations remains to be done to assess the value of the gene bank collections.

AB - Gene banks are a component of a national strategy for the preservation of genetic diversity. Gene bank managers need to have a global and comparable picture of the diversity in their collections in order to rationalize them. Facing a diversity of molecular tools is a difficulty. The IMAGE H2020 project aimed at developing a low cost 60k SNP array to facilitate the mapping of diversity in gene banks. The first test of this array was performed for chicken with 204 samples from 18 local breeds and nine experimental lines provided by Germany, France and Spain. The MAF across population was 0.34, showing that this tool is useful over a range of populations. The principal component analysis and the Neighbor-joining tree showed that local breeds did not cluster according to country and were generally homogenous. Comparison with on-farm populations remains to be done to assess the value of the gene bank collections.

U2 - 10.3920/978-90-8686-940-4_245

DO - 10.3920/978-90-8686-940-4_245

M3 - Conference paper

SP - 1037

EP - 1040

BT - Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP)

A2 - Veerkamp, R.F.

A2 - de Haas, Y.

PB - Wageningen Academic Publishers

CY - Wageningen

T2 - World Congress on Genetics Applied to Livestock Production: WCGALP 2022

Y2 - 3 July 2022 through 8 July 2022

ER -

Tixier-Boichard M, Peynot N, Duclos D, Weigend S, Monteagudo L, Martinez Martinez A et al. Mapping genetic diversity in European gene banks: preliminary results on chickens for the validation of IMAGE001 array. In Veerkamp RF, de Haas Y, editors, Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP): Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges. Wageningen: Wageningen Academic Publishers. 2022. p. 1037-1040. 245 doi: 10.3920/978-90-8686-940-4_245

Mapping genetic diversity in European gene banks: preliminary results on chickens for the validation of IMAGE001 array

Abstract

Conference/symposium

Access to Document

Fingerprint

Cite this