MADMAX - Management and analysis database for multiple ~omics experiments

K. Lin; H.J. Kools; P.J. de Groot; A.K. Gavai; R.K. Basnet; A.B. Bonnema; R.G.F. Visser; J. Leunissen

doi:10.2390/biecoll-jib-2011-160

MADMAX - Management and analysis database for multiple ~omics experiments

K. Lin, H.J. Kools, P.J. de Groot, A.K. Gavai, R.K. Basnet, A.B. Bonnema, R.G.F. Visser, J. Leunissen

Research output: Contribution to journal › Article › Academic › peer-review

Abstract

The rapid increase of ~omics datasets generated by microarray, mass spectrometry and next generation sequencing technologies requires an integrated platform that can combine results from different ~omics datasets to provide novel insights in the understanding of biological systems. MADMAX is designed to provide a solution for storage and analysis of complex ~omics datasets. In addition, analysis results (such as lists of genes) will be merged to reveal candidate genes supported by all datasets. The system constitutes an ISA-Tab compliant LIMS part which is independent of different analysis pipelines. A pilot study of different type of ~omics data in Brassica rapa demonstrates the possible use of MADMAX. The web-based user interface provides easy access to data and analysis tools on top of the database.

Original language	English
Article number	160
Number of pages	16
Journal	Journal of integrative bioinformatics
Volume	8
Issue number	2
DOIs	https://doi.org/10.2390/biecoll-jib-2011-160
Publication status	Published - 2011

Access to Document

10.2390/biecoll-jib-2011-160

Netherlands Toxicogenomics Center (KB-15-003-016, KB-06-003-002)
Peijnenburg, A. (Project Leader)
1/01/08 → 31/12/14
Project: LVVN project

Cite this

@article{a5757ba1e25a478d88436507ed8a5c9f,

title = "MADMAX - Management and analysis database for multiple ~omics experiments",

abstract = "The rapid increase of ~omics datasets generated by microarray, mass spectrometry and next generation sequencing technologies requires an integrated platform that can combine results from different ~omics datasets to provide novel insights in the understanding of biological systems. MADMAX is designed to provide a solution for storage and analysis of complex ~omics datasets. In addition, analysis results (such as lists of genes) will be merged to reveal candidate genes supported by all datasets. The system constitutes an ISA-Tab compliant LIMS part which is independent of different analysis pipelines. A pilot study of different type of ~omics data in Brassica rapa demonstrates the possible use of MADMAX. The web-based user interface provides easy access to data and analysis tools on top of the database.",

author = "K. Lin and H.J. Kools and {de Groot}, P.J. and A.K. Gavai and R.K. Basnet and A.B. Bonnema and R.G.F. Visser and J. Leunissen",

year = "2011",

doi = "10.2390/biecoll-jib-2011-160",

language = "English",

volume = "8",

journal = "Journal of integrative bioinformatics",

issn = "1613-4516",

publisher = "Informationsmanagement in der Biotechnologie e.V. (IMBio e.V.)",

number = "2",

}

TY - JOUR

T1 - MADMAX - Management and analysis database for multiple ~omics experiments

AU - Lin, K.

AU - Kools, H.J.

AU - de Groot, P.J.

AU - Gavai, A.K.

AU - Basnet, R.K.

AU - Bonnema, A.B.

AU - Visser, R.G.F.

AU - Leunissen, J.

PY - 2011

Y1 - 2011

N2 - The rapid increase of ~omics datasets generated by microarray, mass spectrometry and next generation sequencing technologies requires an integrated platform that can combine results from different ~omics datasets to provide novel insights in the understanding of biological systems. MADMAX is designed to provide a solution for storage and analysis of complex ~omics datasets. In addition, analysis results (such as lists of genes) will be merged to reveal candidate genes supported by all datasets. The system constitutes an ISA-Tab compliant LIMS part which is independent of different analysis pipelines. A pilot study of different type of ~omics data in Brassica rapa demonstrates the possible use of MADMAX. The web-based user interface provides easy access to data and analysis tools on top of the database.

AB - The rapid increase of ~omics datasets generated by microarray, mass spectrometry and next generation sequencing technologies requires an integrated platform that can combine results from different ~omics datasets to provide novel insights in the understanding of biological systems. MADMAX is designed to provide a solution for storage and analysis of complex ~omics datasets. In addition, analysis results (such as lists of genes) will be merged to reveal candidate genes supported by all datasets. The system constitutes an ISA-Tab compliant LIMS part which is independent of different analysis pipelines. A pilot study of different type of ~omics data in Brassica rapa demonstrates the possible use of MADMAX. The web-based user interface provides easy access to data and analysis tools on top of the database.

U2 - 10.2390/biecoll-jib-2011-160

DO - 10.2390/biecoll-jib-2011-160

M3 - Article

SN - 1613-4516

VL - 8

JO - Journal of integrative bioinformatics

JF - Journal of integrative bioinformatics

IS - 2

M1 - 160

ER -

MADMAX - Management and analysis database for multiple ~omics experiments

Abstract

Access to Document

Fingerprint

Projects

Netherlands Toxicogenomics Center (KB-15-003-016, KB-06-003-002)

Cite this