Identification of genes regulating growth and fatness traits in pig through hypothalamic transcriptome analysis

D. Perez-montarelo, O. Madsen, E.R. Alves, C. Rodriguez, J.M. Floch, M. Groenen

Research output: Contribution to journalArticleAcademicpeer-review

14 Citations (Scopus)

Abstract

Previous studies on Iberian x Landrace (IBMAP) pig intercrosses have enabled the identification of several QTL regions related to growth and fatness traits; however the genetic variation underlying those QTLs are still unknown. These traits are not only relevant because of their impact on economically important production traits, but also because pig constitutes a widely studied animal model for human obesity and obesity related diseases. The hypothalamus is the main gland regulating growth, food intake and fat accumulation. Therefore, the aim of this work was to identify genes and/or gene transcripts involved in the determination of growth and fatness in pig by a comparison of the whole hypothalamic transcriptome (RNA-seq) in two groups of phenotypically divergent IBMAP pigs. Around 16,000 of the ~25.010 annotated genes were expressed in these hypothalamic samples, with most of them showing intermediate expression levels. Functional analyses supported the key role of the hypothalamus in the regulation of growth, fat accumulation and energy expenditure. Besides, 58,927 potentially new isoforms were detected. More than 250 differentially expressed genes and novel transcript isoforms were identified between the two groups of pigs. Twenty-one DE genes/transcripts that co-localized in previously identified QTL regions and/or whose biological functions are related to the traits of interest were explored in more detail. Additionally, the transcription factors potentially regulating these genes and the subjacent networks and pathways were also analyzed. This study allows us to propose strong candidate genes for growth and fatness based on expression patterns, genomic location and network interactions
LanguageEnglish
Pages195-206
JournalPhysiological genomics
Volume46
Issue number6
DOIs
Publication statusPublished - 2014

Fingerprint

Gene Expression Profiling
Swine
Growth
Genes
Hypothalamus
Protein Isoforms
Obesity
Fats
Gene Regulatory Networks
Transcriptome
Energy Metabolism
Transcription Factors
Animal Models
Eating
RNA

Keywords

  • fatty-acid-composition
  • rna-seq
  • food-intake
  • rt-pcr
  • porcine transcriptome
  • insulin sensitivity
  • expression analysis
  • energy-expenditure
  • extreme phenotypes
  • body-weight

Cite this

Perez-montarelo, D. ; Madsen, O. ; Alves, E.R. ; Rodriguez, C. ; Floch, J.M. ; Groenen, M. / Identification of genes regulating growth and fatness traits in pig through hypothalamic transcriptome analysis. In: Physiological genomics. 2014 ; Vol. 46, No. 6. pp. 195-206.
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Identification of genes regulating growth and fatness traits in pig through hypothalamic transcriptome analysis. / Perez-montarelo, D.; Madsen, O.; Alves, E.R.; Rodriguez, C.; Floch, J.M.; Groenen, M.

In: Physiological genomics, Vol. 46, No. 6, 2014, p. 195-206.

Research output: Contribution to journalArticleAcademicpeer-review

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