High-throughput sequencing technologies for plant pest diagnosis: challenges and opportunities

A. Olmos; N. Boonham; T. Candresse; P. Gentit; B. Giovani; D.  Kutnjak; L. Liefting; H.J. Maree; A. Minafra; A. Moreira; M.K. Nakhla; F. Petter; M. Ravnikar; B.C. Rodoni; J.W. Roenhorst; M. Rott; A.B. Ruiz-Garcia; J. Santala; G. Stancanelli; R.A.A. van der Vlugt; C. Varveri; M. Westenberg; T. Wetzel; H. Ziebell; S. Massart

doi:10.1111/epp.12472

High-throughput sequencing technologies for plant pest diagnosis: challenges and opportunities

A. Olmos^*, N. Boonham, T. Candresse, P. Gentit, B. Giovani, D. Kutnjak, L. Liefting, H.J. Maree, A. Minafra, A. Moreira, M.K. Nakhla, F. Petter, M. Ravnikar, B.C. Rodoni, J.W. Roenhorst, M. Rott, A.B. Ruiz-Garcia, J. Santala, G. Stancanelli, R.A.A. van der VlugtC. Varveri, M. Westenberg, T. Wetzel, H. Ziebell, S. Massart

^*Corresponding author for this work

Research output: Contribution to journal › Article › Academic › peer-review

54 Citations (Scopus)

Abstract

High‐throughput sequencing (HTS) technologies have revolutionized plant pest research and are now raising interest for plant pest diagnostics, with plant virus diagnostics at the forefront of development. However, the application of HTS in plant pest diagnostics raises important challenges that plant health regulators will have to address. Adapted infrastructures, technical guidelines and training are pivotal for further use and adoption of the HTS technologies in the phytosanitary framework.

Original language	English
Pages (from-to)	219-224
Journal	EPPO Bulletin
Volume	48
Issue number	2
DOIs	https://doi.org/10.1111/epp.12472
Publication status	Published - Aug 2018

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10.1111/epp.12472

KV 1605-036 Fundament fytosanitair robuuste ketens (BO-50-002-053, BO-33.05-002-010)
Bonants, P. (Project Leader)
1/01/17 → 31/12/19
Project: LVVN project
Viruscollecties (BO-43-102.04-002, BO-43-011.02-001, BO-20-002.01-001, BO-20-020-001, BO-20-002-020)
van der Vlugt, R. (Project Leader)
1/01/13 → 31/12/24
Project: LVVN project

Cite this

Olmos, A., Boonham, N., Candresse, T., Gentit, P., Giovani, B., Kutnjak, D., Liefting, L., Maree, H. J., Minafra, A., Moreira, A., Nakhla, M. K., Petter, F., Ravnikar, M., Rodoni, B. C., Roenhorst, J. W., Rott, M., Ruiz-Garcia, A. B., Santala, J., Stancanelli, G., ... Massart, S. (2018). High-throughput sequencing technologies for plant pest diagnosis: challenges and opportunities. EPPO Bulletin, 48(2), 219-224. https://doi.org/10.1111/epp.12472

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title = "High-throughput sequencing technologies for plant pest diagnosis: challenges and opportunities",

abstract = "High‐throughput sequencing (HTS) technologies have revolutionized plant pest research and are now raising interest for plant pest diagnostics, with plant virus diagnostics at the forefront of development. However, the application of HTS in plant pest diagnostics raises important challenges that plant health regulators will have to address. Adapted infrastructures, technical guidelines and training are pivotal for further use and adoption of the HTS technologies in the phytosanitary framework.",

author = "A. Olmos and N. Boonham and T. Candresse and P. Gentit and B. Giovani and D. Kutnjak and L. Liefting and H.J. Maree and A. Minafra and A. Moreira and M.K. Nakhla and F. Petter and M. Ravnikar and B.C. Rodoni and J.W. Roenhorst and M. Rott and A.B. Ruiz-Garcia and J. Santala and G. Stancanelli and {van der Vlugt}, R.A.A. and C. Varveri and M. Westenberg and T. Wetzel and H. Ziebell and S. Massart",

year = "2018",

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Olmos, A, Boonham, N, Candresse, T, Gentit, P, Giovani, B, Kutnjak, D, Liefting, L, Maree, HJ, Minafra, A, Moreira, A, Nakhla, MK, Petter, F, Ravnikar, M, Rodoni, BC, Roenhorst, JW, Rott, M, Ruiz-Garcia, AB, Santala, J, Stancanelli, G, van der Vlugt, RAA, Varveri, C, Westenberg, M, Wetzel, T, Ziebell, H & Massart, S 2018, 'High-throughput sequencing technologies for plant pest diagnosis: challenges and opportunities', EPPO Bulletin, vol. 48, no. 2, pp. 219-224. https://doi.org/10.1111/epp.12472

TY - JOUR

T1 - High-throughput sequencing technologies for plant pest diagnosis: challenges and opportunities

AU - Olmos, A.

AU - Boonham, N.

AU - Candresse, T.

AU - Gentit, P.

AU - Giovani, B.

AU - Kutnjak, D.

AU - Liefting, L.

AU - Maree, H.J.

AU - Minafra, A.

AU - Moreira, A.

AU - Nakhla, M.K.

AU - Petter, F.

AU - Ravnikar, M.

AU - Rodoni, B.C.

AU - Roenhorst, J.W.

AU - Rott, M.

AU - Ruiz-Garcia, A.B.

AU - Santala, J.

AU - Stancanelli, G.

AU - van der Vlugt, R.A.A.

AU - Varveri, C.

AU - Westenberg, M.

AU - Wetzel, T.

AU - Ziebell, H.

AU - Massart, S.

PY - 2018/8

Y1 - 2018/8

N2 - High‐throughput sequencing (HTS) technologies have revolutionized plant pest research and are now raising interest for plant pest diagnostics, with plant virus diagnostics at the forefront of development. However, the application of HTS in plant pest diagnostics raises important challenges that plant health regulators will have to address. Adapted infrastructures, technical guidelines and training are pivotal for further use and adoption of the HTS technologies in the phytosanitary framework.

AB - High‐throughput sequencing (HTS) technologies have revolutionized plant pest research and are now raising interest for plant pest diagnostics, with plant virus diagnostics at the forefront of development. However, the application of HTS in plant pest diagnostics raises important challenges that plant health regulators will have to address. Adapted infrastructures, technical guidelines and training are pivotal for further use and adoption of the HTS technologies in the phytosanitary framework.

U2 - 10.1111/epp.12472

DO - 10.1111/epp.12472

M3 - Article

SN - 0250-8052

VL - 48

SP - 219

EP - 224

JO - EPPO Bulletin

JF - EPPO Bulletin

IS - 2

ER -

High-throughput sequencing technologies for plant pest diagnosis: challenges and opportunities

Abstract

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Projects

KV 1605-036 Fundament fytosanitair robuuste ketens (BO-50-002-053, BO-33.05-002-010)

Viruscollecties (BO-43-102.04-002, BO-43-011.02-001, BO-20-002.01-001, BO-20-020-001, BO-20-002-020)

Cite this