Genotype x environment interaction QTL mapping in plants: lessons from Arabidopsis

M. El-Soda; M. Malosetti; B.J. Zwaan; M. Koornneef; M.G.M. Aarts

doi:10.1016/j.tplants.2014.01.001

Genotype x environment interaction QTL mapping in plants: lessons from Arabidopsis

M. El-Soda, M. Malosetti, B.J. Zwaan, M. Koornneef, M.G.M. Aarts

Research output: Contribution to journal › Article › Academic › peer-review

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Abstract

Plant growth and development are influenced by the genetic composition of the plant (G), the environment (E), and the interaction between them (G × E). To produce suitable genotypes for multiple environments, G × E should be accounted for and assessed in plant-breeding programs. Here, we review the genetic basis of G × E and its consequence for quantitative trait loci (QTL) mapping in biparental and genome-wide association (GWA) mapping populations. We also consider the implications of G × E for understanding plant fitness trade-offs and evolutionary ecology

Original language	English
Pages (from-to)	390-398
Journal	Trends in Plant Science
Volume	19
Issue number	6
DOIs	https://doi.org/10.1016/j.tplants.2014.01.001
Publication status	Published - 2014

Keywords

quantitative trait loci
genome-wide association
adaptive phenotypic plasticity
flowering time
natural variation
mixed-model
missing heritability
drought tolerance
complex traits
life-history

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10.1016/j.tplants.2014.01.001

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title = "Genotype x environment interaction QTL mapping in plants: lessons from Arabidopsis",

abstract = "Plant growth and development are influenced by the genetic composition of the plant (G), the environment (E), and the interaction between them (G × E). To produce suitable genotypes for multiple environments, G × E should be accounted for and assessed in plant-breeding programs. Here, we review the genetic basis of G × E and its consequence for quantitative trait loci (QTL) mapping in biparental and genome-wide association (GWA) mapping populations. We also consider the implications of G × E for understanding plant fitness trade-offs and evolutionary ecology",

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AU - El-Soda, M.

AU - Malosetti, M.

AU - Zwaan, B.J.

AU - Koornneef, M.

AU - Aarts, M.G.M.

PY - 2014

Y1 - 2014

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AB - Plant growth and development are influenced by the genetic composition of the plant (G), the environment (E), and the interaction between them (G × E). To produce suitable genotypes for multiple environments, G × E should be accounted for and assessed in plant-breeding programs. Here, we review the genetic basis of G × E and its consequence for quantitative trait loci (QTL) mapping in biparental and genome-wide association (GWA) mapping populations. We also consider the implications of G × E for understanding plant fitness trade-offs and evolutionary ecology

KW - quantitative trait loci

KW - genome-wide association

KW - adaptive phenotypic plasticity

KW - flowering time

KW - natural variation

KW - mixed-model

KW - missing heritability

KW - drought tolerance

KW - complex traits

KW - life-history

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DO - 10.1016/j.tplants.2014.01.001

M3 - Article

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VL - 19

SP - 390

EP - 398

JO - Trends in Plant Science

JF - Trends in Plant Science

IS - 6

ER -

Genotype x environment interaction QTL mapping in plants: lessons from Arabidopsis

Abstract

Keywords

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