TY - JOUR
T1 - Genome resequencing and comparative variome analysis in a Brassica rapa and Brassica oleracea collection
AU - Cheng, Feng
AU - Wu, Jian
AU - Cai, Chengcheng
AU - Fu, Lixia
AU - Liang, Jianli
AU - Borm, Theo
AU - Zhuang, Mu
AU - Zhang, Yangyong
AU - Zhang, Fenglan
AU - Bonnema, Guusje
AU - Wang, Xiaowu
PY - 2016
Y1 - 2016
N2 - The closely related species Brassica rapa and B. oleracea encompass a wide range of vegetable, fodder and oil crops. The release of their reference genomes has facilitated resequencing collections of B. rapa and B. oleracea aiming to build their variome datasets. These data can be used to investigate the evolutionary relationships between and within the different species and the domestication of the crops, hereafter named morphotypes. These data can also be used in genetic studies aiming at the identification of genes that influence agronomic traits. We selected and resequenced 199 B. rapa and 119 B. oleracea accessions representing 12 and nine morphotypes, respectively. Based on these resequencing data, we obtained 2,249,473 and 3,852,169 high quality SNPs (single-nucleotide polymorphisms), as well as 303,617 and 417,004 InDels for the B. rapa and B. oleracea populations, respectively. The variome datasets of B. rapa and B. oleracea represent valuable resources to researchers working on evolution, domestication or breeding of Brassica vegetable crops.
AB - The closely related species Brassica rapa and B. oleracea encompass a wide range of vegetable, fodder and oil crops. The release of their reference genomes has facilitated resequencing collections of B. rapa and B. oleracea aiming to build their variome datasets. These data can be used to investigate the evolutionary relationships between and within the different species and the domestication of the crops, hereafter named morphotypes. These data can also be used in genetic studies aiming at the identification of genes that influence agronomic traits. We selected and resequenced 199 B. rapa and 119 B. oleracea accessions representing 12 and nine morphotypes, respectively. Based on these resequencing data, we obtained 2,249,473 and 3,852,169 high quality SNPs (single-nucleotide polymorphisms), as well as 303,617 and 417,004 InDels for the B. rapa and B. oleracea populations, respectively. The variome datasets of B. rapa and B. oleracea represent valuable resources to researchers working on evolution, domestication or breeding of Brassica vegetable crops.
U2 - 10.1038/sdata.2016.119
DO - 10.1038/sdata.2016.119
M3 - Article
AN - SCOPUS:85006983577
VL - 3
JO - Scientific Data
JF - Scientific Data
SN - 2052-4463
M1 - 160119
ER -