Extensive functional genomics information from early developmental time points for pig and chicken

H. Acloque; P.W. Harrison; W. Lakhal; F. Martin; A.L. Archibald; M. Beinat; M. Davey; S. Djebali; S. Foissac; S. Guizard; C. Guyomar; R. Kuo; C. Kurylo; O. Madsen; K. Miedzinska; M. Mongellaz; J. Smith; J. Smith; A. Sokolov; J. de Vos; E. Giuffra; M. Watson

doi:10.3920/978-90-8686-940-4_550

Extensive functional genomics information from early developmental time points for pig and chicken

H. Acloque, P.W. Harrison, W. Lakhal, F. Martin, A.L. Archibald, M. Beinat, M. Davey, S. Djebali, S. Foissac, S. Guizard, C. Guyomar, R. Kuo, C. Kurylo, O. Madsen, K. Miedzinska, M. Mongellaz, J. Smith, J. Smith, A. Sokolov, J. de VosE. Giuffra, M. Watson

Research output: Chapter in Book/Report/Conference proceeding › Conference paper › Academic

Abstract

The global Functional Annotation of Farm Animal Genomes initiative (FAANG) aims to improve animal breeding by improved genomic prediction via integration of functional genomics information. The GENESWitCH project has produced extensive functional genomics information for a variety of important tissues at early embryonic timepoints for both chickens and pigs. These datasets will be integrated to produce both tissue and time-point specific transcript, gene, and regulatory annotation for both species. In this paper, we describe the aims of the project, and the initial release of both raw and processed data.

Original language	English
Title of host publication	Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP)
Subtitle of host publication	Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges
Editors	R.F. Veerkamp, Y. de Haas
Place of Publication	Wageningen
Publisher	Wageningen Academic Publishers
Pages	2281-2284
ISBN (Electronic)	9789086869404
DOIs	https://doi.org/10.3920/978-90-8686-940-4_550
Publication status	Published - 2022
Event	World Congress on Genetics Applied to Livestock Production: WCGALP 2022 - Rotterdam, Netherlands Duration: 3 Jul 2022 → 8 Jul 2022

Conference/symposium

Conference/symposium	World Congress on Genetics Applied to Livestock Production: WCGALP 2022
Country/Territory	Netherlands
City	Rotterdam
Period	3/07/22 → 8/07/22

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10.3920/978-90-8686-940-4_550Licence: CC BY

https://edepot.wur.nl/588156Licence: CC BY

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Acloque, H., Harrison, P. W., Lakhal, W., Martin, F., Archibald, A. L., Beinat, M., Davey, M., Djebali, S., Foissac, S., Guizard, S., Guyomar, C., Kuo, R., Kurylo, C., Madsen, O., Miedzinska, K., Mongellaz, M., Smith, J., Smith, J., Sokolov, A., ... Watson, M. (2022). Extensive functional genomics information from early developmental time points for pig and chicken. In R. F. Veerkamp, & Y. de Haas (Eds.), Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP): Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges (pp. 2281-2284). Article 550 Wageningen Academic Publishers. https://doi.org/10.3920/978-90-8686-940-4_550

Acloque, H. ; Harrison, P.W. ; Lakhal, W. et al. / Extensive functional genomics information from early developmental time points for pig and chicken. Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP): Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges. editor / R.F. Veerkamp ; Y. de Haas. Wageningen : Wageningen Academic Publishers, 2022. pp. 2281-2284

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title = "Extensive functional genomics information from early developmental time points for pig and chicken",

abstract = "The global Functional Annotation of Farm Animal Genomes initiative (FAANG) aims to improve animal breeding by improved genomic prediction via integration of functional genomics information. The GENESWitCH project has produced extensive functional genomics information for a variety of important tissues at early embryonic timepoints for both chickens and pigs. These datasets will be integrated to produce both tissue and time-point specific transcript, gene, and regulatory annotation for both species. In this paper, we describe the aims of the project, and the initial release of both raw and processed data.",

author = "H. Acloque and P.W. Harrison and W. Lakhal and F. Martin and A.L. Archibald and M. Beinat and M. Davey and S. Djebali and S. Foissac and S. Guizard and C. Guyomar and R. Kuo and C. Kurylo and O. Madsen and K. Miedzinska and M. Mongellaz and J. Smith and J. Smith and A. Sokolov and {de Vos}, J. and E. Giuffra and M. Watson",

year = "2022",

doi = "10.3920/978-90-8686-940-4_550",

language = "English",

pages = "2281--2284",

editor = "R.F. Veerkamp and {de Haas}, Y.",

booktitle = "Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP)",

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address = "Netherlands",

note = "World Congress on Genetics Applied to Livestock Production: WCGALP 2022 ; Conference date: 03-07-2022 Through 08-07-2022",

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Acloque, H, Harrison, PW, Lakhal, W, Martin, F, Archibald, AL, Beinat, M, Davey, M, Djebali, S, Foissac, S, Guizard, S, Guyomar, C, Kuo, R, Kurylo, C, Madsen, O, Miedzinska, K, Mongellaz, M, Smith, J, Smith, J, Sokolov, A, de Vos, J, Giuffra, E & Watson, M 2022, Extensive functional genomics information from early developmental time points for pig and chicken. in RF Veerkamp & Y de Haas (eds), Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP): Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges., 550, Wageningen Academic Publishers, Wageningen, pp. 2281-2284, World Congress on Genetics Applied to Livestock Production: WCGALP 2022, Rotterdam, Netherlands, 3/07/22. https://doi.org/10.3920/978-90-8686-940-4_550

Extensive functional genomics information from early developmental time points for pig and chicken. / Acloque, H.; Harrison, P.W.; Lakhal, W. et al.
Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP): Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges. ed. / R.F. Veerkamp; Y. de Haas. Wageningen: Wageningen Academic Publishers, 2022. p. 2281-2284 550.

Research output: Chapter in Book/Report/Conference proceeding › Conference paper › Academic

TY - GEN

T1 - Extensive functional genomics information from early developmental time points for pig and chicken

AU - Acloque, H.

AU - Harrison, P.W.

AU - Lakhal, W.

AU - Martin, F.

AU - Archibald, A.L.

AU - Beinat, M.

AU - Davey, M.

AU - Djebali, S.

AU - Foissac, S.

AU - Guizard, S.

AU - Guyomar, C.

AU - Kuo, R.

AU - Kurylo, C.

AU - Madsen, O.

AU - Miedzinska, K.

AU - Mongellaz, M.

AU - Smith, J.

AU - Sokolov, A.

AU - de Vos, J.

AU - Giuffra, E.

AU - Watson, M.

PY - 2022

Y1 - 2022

N2 - The global Functional Annotation of Farm Animal Genomes initiative (FAANG) aims to improve animal breeding by improved genomic prediction via integration of functional genomics information. The GENESWitCH project has produced extensive functional genomics information for a variety of important tissues at early embryonic timepoints for both chickens and pigs. These datasets will be integrated to produce both tissue and time-point specific transcript, gene, and regulatory annotation for both species. In this paper, we describe the aims of the project, and the initial release of both raw and processed data.

AB - The global Functional Annotation of Farm Animal Genomes initiative (FAANG) aims to improve animal breeding by improved genomic prediction via integration of functional genomics information. The GENESWitCH project has produced extensive functional genomics information for a variety of important tissues at early embryonic timepoints for both chickens and pigs. These datasets will be integrated to produce both tissue and time-point specific transcript, gene, and regulatory annotation for both species. In this paper, we describe the aims of the project, and the initial release of both raw and processed data.

U2 - 10.3920/978-90-8686-940-4_550

DO - 10.3920/978-90-8686-940-4_550

M3 - Conference paper

SP - 2281

EP - 2284

BT - Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP)

A2 - Veerkamp, R.F.

A2 - de Haas, Y.

PB - Wageningen Academic Publishers

CY - Wageningen

T2 - World Congress on Genetics Applied to Livestock Production: WCGALP 2022

Y2 - 3 July 2022 through 8 July 2022

ER -

Acloque H, Harrison PW, Lakhal W, Martin F, Archibald AL, Beinat M et al. Extensive functional genomics information from early developmental time points for pig and chicken. In Veerkamp RF, de Haas Y, editors, Proceedings of 12th World Congress on Genetics Applied to Livestock Production (WCGALP): Technical and species orientated innovations in animal breeding, and contribution of genetics to solving societal challenges. Wageningen: Wageningen Academic Publishers. 2022. p. 2281-2284. 550 doi: 10.3920/978-90-8686-940-4_550

Extensive functional genomics information from early developmental time points for pig and chicken

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