Exploration of hitherto-uncultured bacteria from the rhizosphere

U.N. da Rocha; L.S. van Overbeek; J.D. van Elsas

doi:10.1111/j.1574-6941.2009.00702.x

Exploration of hitherto-uncultured bacteria from the rhizosphere

U.N. da Rocha, L.S. van Overbeek, J.D. van Elsas

Research output: Contribution to journal › Article › Academic › peer-review

85 Citations (Scopus)

Abstract

The rhizosphere environment selects a particular microbial community that arises from the one present in bulk soil due to the release of particular compounds in exudates and different opportunities for microbial colonization. During plant-microorganism coevolution, microbial functions supporting plant health and productivity have developed, of which most are described in cultured plant-associated bacteria. This review discusses the state of the art concerning the ecology of the hitherto-uncultured bacteria of the rhizosphere environment, focusing on Acidobacteria, Verrucomicrobia and Planctomycetes. Furthermore, a strategy is proposed to recover bacterial isolates from these taxa from the rhizosphere environment.

Original language	English
Pages (from-to)	313-328
Journal	FEMS Microbiology Ecology
Volume	69
Issue number	3
DOIs	https://doi.org/10.1111/j.1574-6941.2009.00702.x
Publication status	Published - 2009

Keywords

microbial community structure
soil bacteria
plant-growth
16s rdna
marine bacterioplankton
phylum acidobacteria
chemical-processes
wheat rhizosphere
field conditions
analysis reveals

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

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10.1111/j.1574-6941.2009.00702.x

Cite this

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title = "Exploration of hitherto-uncultured bacteria from the rhizosphere",

abstract = "The rhizosphere environment selects a particular microbial community that arises from the one present in bulk soil due to the release of particular compounds in exudates and different opportunities for microbial colonization. During plant-microorganism coevolution, microbial functions supporting plant health and productivity have developed, of which most are described in cultured plant-associated bacteria. This review discusses the state of the art concerning the ecology of the hitherto-uncultured bacteria of the rhizosphere environment, focusing on Acidobacteria, Verrucomicrobia and Planctomycetes. Furthermore, a strategy is proposed to recover bacterial isolates from these taxa from the rhizosphere environment.",

keywords = "microbial community structure, soil bacteria, plant-growth, 16s rdna, marine bacterioplankton, phylum acidobacteria, chemical-processes, wheat rhizosphere, field conditions, analysis reveals",

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AU - van Overbeek, L.S.

AU - van Elsas, J.D.

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PY - 2009

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N2 - The rhizosphere environment selects a particular microbial community that arises from the one present in bulk soil due to the release of particular compounds in exudates and different opportunities for microbial colonization. During plant-microorganism coevolution, microbial functions supporting plant health and productivity have developed, of which most are described in cultured plant-associated bacteria. This review discusses the state of the art concerning the ecology of the hitherto-uncultured bacteria of the rhizosphere environment, focusing on Acidobacteria, Verrucomicrobia and Planctomycetes. Furthermore, a strategy is proposed to recover bacterial isolates from these taxa from the rhizosphere environment.

AB - The rhizosphere environment selects a particular microbial community that arises from the one present in bulk soil due to the release of particular compounds in exudates and different opportunities for microbial colonization. During plant-microorganism coevolution, microbial functions supporting plant health and productivity have developed, of which most are described in cultured plant-associated bacteria. This review discusses the state of the art concerning the ecology of the hitherto-uncultured bacteria of the rhizosphere environment, focusing on Acidobacteria, Verrucomicrobia and Planctomycetes. Furthermore, a strategy is proposed to recover bacterial isolates from these taxa from the rhizosphere environment.

KW - microbial community structure

KW - soil bacteria

KW - plant-growth

KW - 16s rdna

KW - marine bacterioplankton

KW - phylum acidobacteria

KW - chemical-processes

KW - wheat rhizosphere

KW - field conditions

KW - analysis reveals

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DO - 10.1111/j.1574-6941.2009.00702.x

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JO - FEMS Microbiology Ecology

JF - FEMS Microbiology Ecology

IS - 3

ER -

Exploration of hitherto-uncultured bacteria from the rhizosphere

Abstract

Keywords

UN SDGs

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