epiGBS2: an automated snakemake workflow for highly multiplexed reduced representation bisulfite sequencing

Original language	English
Publisher	Netherlands Institute of Ecology (NIOO-KNAW)
DOIs	https://doi.org/10.5281/zenodo.3819995
Publication status	Published - 11 May 2020

Access to Document

• 10.5281/zenodo.3819995

Research output

Research output per year 2022 2022 2022

• 1 Article

Research output per year

Research output per year

• epiGBS2: Improvements and evaluation of highly multiplexed, epiGBS-based reduced representation bisulfite sequencing

  Gawehns, F., Postuma, M., van Antro, M., Nunn, A., Sepers, B., Fatma, S., van Gurp, T. P., Wagemaker, N. C. A. M., Mateman, A. C., Milanovic-Ivanovic, S., Groβe, I., van Oers, K., Vergeer, P. & Verhoeven, K. J. F., Jul 2022, In: Molecular Ecology Resources. 22, 5, p. 2087-2104

  Research output: Contribution to journal › Article › Academic › peer-review

  Open Access

  • Reduced Representation Bisulfite Sequencing 100%
  • Bioinformatics 100%
  • Methylation 66%
  • Parus Major 66%
  • Single-Nucleotide Polymorphism 33%
  14 Citations (Scopus)

Datasets

• epiGBS2: Improvements and evaluation of highly multiplexed, epiGBS-based reduced representation bisulfite sequencing

  Gawehns, F. (Creator), Postuma, M. (Creator), van Antro, M. (Creator), Nunn, A. (Creator), Sepers, B. (Creator), Fatma, S. (Creator), van Gurp, T. (Creator), Wagemaker, N. (Creator), Mateman, C. (Creator), Milanovic-Ivanovic, S. (Creator), Grosse, I. (Creator), van Oers, K. (Creator), Vergeer, P. (Creator) & Verhoeven, K. (Creator), Netherlands Institute of Ecology (NIOO-KNAW), 31 Dec 2021

  DOI: 10.5281/zenodo.5519369

  Dataset

• Test data for epiGBS

  Gawehns, F. (Creator), Postuma, M. (Creator), van Antro, M. (Creator), Nunn, A. (Creator), Sepers, B. (Creator), Fatma, S. (Creator), van Gurp, T. (Creator), Wagemaker, N. C. A. M. (Creator), Mateman, C. (Creator), Milanovic-Ivanovic, S. (Creator), Grosse, I. (Creator), van Oers, K. (Creator), Vergeer, P. (Creator) & Verhoeven, K. J. F. (Creator), Netherlands Institute of Ecology (NIOO-KNAW), 19 Jan 2022

  DOI: 10.5281/zenodo.5878925

  Dataset

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Postuma, M., van Gurp, T., Fatma, S., & Gawehns, F. (2020). epiGBS2: an automated snakemake workflow for highly multiplexed reduced representation bisulfite sequencing. Software, Netherlands Institute of Ecology (NIOO-KNAW). https://doi.org/10.5281/zenodo.3819995

Postuma, Maarten (Author) ; van Gurp, Thomas (Author) ; Fatma, Samar (Author) et al.. / epiGBS2: an automated snakemake workflow for highly multiplexed reduced representation bisulfite sequencing. [Software].

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title = "epiGBS2: an automated snakemake workflow for highly multiplexed reduced representation bisulfite sequencing",

author = "Maarten Postuma and {van Gurp}, Thomas and Samar Fatma and Fleur Gawehns",

year = "2020",

month = may,

day = "11",

doi = "10.5281/zenodo.3819995",

language = "English",

publisher = "Netherlands Institute of Ecology (NIOO-KNAW)",

address = "Netherlands",

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Postuma, M, van Gurp, T, Fatma, S & Gawehns, F, epiGBS2: an automated snakemake workflow for highly multiplexed reduced representation bisulfite sequencing, 2020, Software, Netherlands Institute of Ecology (NIOO-KNAW). https://doi.org/10.5281/zenodo.3819995

epiGBS2: an automated snakemake workflow for highly multiplexed reduced representation bisulfite sequencing. Postuma, Maarten (Author); van Gurp, Thomas (Author); Fatma, Samar (Author) et al.. 2020. Netherlands Institute of Ecology (NIOO-KNAW).

Research output: Non-textual form › Software

TY - ADVS

T1 - epiGBS2: an automated snakemake workflow for highly multiplexed reduced representation bisulfite sequencing

AU - Postuma, Maarten

AU - van Gurp, Thomas

AU - Fatma, Samar

AU - Gawehns, Fleur

PY - 2020/5/11

Y1 - 2020/5/11

U2 - 10.5281/zenodo.3819995

DO - 10.5281/zenodo.3819995

M3 - Software

PB - Netherlands Institute of Ecology (NIOO-KNAW)

ER -

Postuma M, van Gurp T, Fatma S, Gawehns F. epiGBS2: an automated snakemake workflow for highly multiplexed reduced representation bisulfite sequencing Netherlands Institute of Ecology (NIOO-KNAW). 2020. doi: 10.5281/zenodo.3819995