Draft genome resource for the potato powdery scab pathogen spongospora subterranea

Stefan Ciaghi, Sigrid Neuhauser, Arne Schwelm*

*Corresponding author for this work

Research output: Contribution to journalArticleAcademicpeer-review

10 Citations (Scopus)

Abstract

The Plasmodiophorida (Phytomyxea, Rhizaria) are a group of protists that infect plants. Of this group, Spongospora subterranea causes major problems for the potato industry by causing powdery scab and root galling of potatoes and as vector for the Potato mop-top virus (PMTV) (genus Pomovirus, family Virgaviridae). A single tuber isolate (SSUBK13) of this uncultivable protist was used to generate DNA for Illumina sequencing. The data were assembled to a draft genome of 28.08 Mb consisting of 2,340 contigs and an L50 of 280. A total of 10,778 genes were predicted and 93% of the BUSCO genes were detected. The presented genome assembly is only the second genome of a plasmodiophorid. The data will accelerate functional genomics to study poorly understood interaction of plasmodiophorids and their hosts.

Original languageEnglish
Pages (from-to)1227-1229
Number of pages3
JournalMolecular Plant-Microbe Interactions
Volume31
Issue number12
DOIs
Publication statusPublished - Dec 2018
Externally publishedYes

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