Complex evolutionary history of translation elongation factor 2 and diphthamide biosynthesis in archaea and parabasalids

Adrienne B. Narrowe, Anja Spang, Courtney W. Stairs, Eva F. Caceres, Brett J. Baker, Christopher S. Miller*, Thijs J.G. Ettema

*Corresponding author for this work

Research output: Contribution to journalArticleAcademicpeer-review

15 Citations (Scopus)

Abstract

Diphthamide is a modified histidine residue which is uniquely present in archaeal and eukaryotic elongation factor 2 (EF-2), an essential GTPase responsible for catalyzing the coordinated translocation of tRNA andmRNA through the ribosome. In part due to the roleofdiphthamide inmaintaining translational fidelity, itwas previously assumed that diphthamide biosynthesis genes (dph) are conserved across all eukaryotes and archaea. Here, comparative analysis of new and existing genomes reveals that some archaea (i.e., members of the Asgard superphylum,Geoarchaea, andKorarchaeota) and eukaryotes (i.e., parabasalids) lack dph. In addition, while EF-2 was thought to exist as a single copy in archaea, many of these dph-lacking archaeal genomes encode a second EF-2 paralog missing key residues required for diphthamide modification and for normal translocase function, perhaps suggesting functional divergence linked to loss of diphthamide biosynthesis. Interestingly, some Heimdallarchaeota previously suggested to be most closely related to the eukaryotic ancestormaintain dph genes and a single gene encoding canonical EF-2.Our findings reveal that the ability to produce diphthamide, once thought to be a universal feature in archaea and eukaryotes, has been lost multiple times during evolution, and suggest that anticipated compensatory mechanisms evolved independently.

Original languageEnglish
Pages (from-to)2380-2393
Number of pages14
JournalGenome Biology and Evolution
Volume10
Issue number9
DOIs
Publication statusPublished - 27 Aug 2018
Externally publishedYes

Keywords

  • Asgard
  • Diphthamide
  • EF-2
  • Korarchaeota
  • Metagenomics
  • Trichomonas

Fingerprint Dive into the research topics of 'Complex evolutionary history of translation elongation factor 2 and diphthamide biosynthesis in archaea and parabasalids'. Together they form a unique fingerprint.

Cite this