Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT)

S. Spring, M. Visser, M. Lu, A. Copeland, A. Lapidus, S. Lucas, J.F. Cheng, C. Han, R. Tapia, L.A. Goodwin, S. Pitluck, N. Ivanova, M. Land, L. Hauser, F. Larimer, M. Rohde, M. Göker, J.C. Detter, N. Kyrpides, T. WoykeP.J. Schaap, C.M. Plugge, G. Muyzer, J. Kuever, I.A.C. Pereira, S.N. Parshina, R. Bernier-Latmani, A.J.M. Stams, H.P. Klenk

Research output: Contribution to journalArticleAcademicpeer-review

17 Citations (Scopus)

Abstract

Strain DLT (= DSM 2154 = ATCC 23193 = NCIMB 8452) is the type strain of the species Desulfotomaculum ruminis [1], one out of current-ly 30 species with validly published names in the paraphyletic genus Desulfotomaculum [2,3]. Strain DLT was initially isolated by G. S. Coleman in the 1950s from the rumen of hay-fed sheep [4]. Dissimilatory reduction of sulfate to sulfide in the rumen was first demonstrated by Lewis [5], who dosed fistulated sheep with sulfate and deter-mined the amount of sulfide produced. As high amounts of sulfide may be toxic to animals, bacte-rial sulfate-reduction in ruminants was a concern due to the presence of sulfate in grass and hay. D. ruminis represented the first pure culture of a sul-fate-reducing bacterium isolated from the rumen. The genus name was derived from the Latin words 'de', from, ‘sulfur’, sulfur, and 'tomaculum', a kind of sausage, meaning 'a sausage-shaped sul-fate reducer' [2,6]. The species epithet is derived from the Latin word 'rumen', throat, first stomach (rumen) of a ruminant, meaning of a rumen [1,2]. Here, we present a summary classification and a set of features for D. ruminis strain DLT, together with the description of the complete genomic se-quencing and annotation. The complete genome sequence of strain DLT will provide valuable in-formation for defining a more adequate descrip-tion of the currently paraphyletic genus Desulfotomaculum
Original languageEnglish
Pages (from-to)304-319
JournalStandards in Genomic Sciences
Volume7
DOIs
Publication statusPublished - 2012

Keywords

  • bacterial names
  • classification
  • hydrogenases
  • database
  • archaea
  • system
  • site
  • tool

Fingerprint

Dive into the research topics of 'Complete genome sequence of the sulfate-reducing firmicute Desulfotomaculum ruminis type strain (DLT)'. Together they form a unique fingerprint.

Cite this