Code for comparison of Caco-2 cell transcriptomes

Janneke Elzinga; Menno Grouls; Guido J.E.J. Hooiveld

doi:10.5281/zenodo.7525835

Code for comparison of Caco-2 cell transcriptomes

Janneke Elzinga^*
, Menno Grouls
, Guido J.E.J. Hooiveld

^*Corresponding author for this work

Research output: Non-textual form › Software

Abstract

This ZIP-archive contains six files, including R-code, required to analyze array data from the Gene Expression Omnibus. This workflow was used for the paper:

Title: Systematic comparison of transcriptomes of Caco-2 cells cultured under different cellular and physiological conditions.Authors: Janneke Elzinga, Menno Grouls, Guido Hooiveld et al. Published in: Archives of Toxicology (2023), DOI: 10.1007/s00204-022-03430-y

Original language	English
Publisher	Wageningen University
Media of output	Online
DOIs	https://doi.org/10.5281/zenodo.7525835
Publication status	Published - 11 Jan 2023

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

SDG 3 Good Health and Well-being

Keywords

3R
Caco-2
Good in vitro method practices
Gut-on-a-chip
In vitro
Transcriptome

Access to Document

10.5281/zenodo.7525835Licence: CC BY

1 Article

Systematic comparison of transcriptomes of Caco-2 cells cultured under different cellular and physiological conditions
Elzinga, J., Grouls, M., Hooiveld, G. J. E. J., van der Zande, M., Smidt, H. & Bouwmeester, H., 21 Jan 2023, In: Archives of Toxicology. 97, p. 737–753 17 p.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
9 Link opens in a new tab Citations (Scopus)

1 Finished

VLAG AIO gut microbiome chip (KB-37-002-020, KB-23-002-036)
van der Zande, M. (Project Leader)
1/01/18 → 31/12/22
Project: LVVN project

Cite this

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title = "Code for comparison of Caco-2 cell transcriptomes",

abstract = "This ZIP-archive contains six files, including R-code, required to analyze array data from the Gene Expression Omnibus. This workflow was used for the paper: Title: Systematic comparison of transcriptomes of Caco-2 cells cultured under different cellular and physiological conditions.Authors: Janneke Elzinga, Menno Grouls, Guido Hooiveld et al. Published in: Archives of Toxicology (2023), DOI: 10.1007/s00204-022-03430-y",

keywords = "3R, Caco-2, Good in vitro method practices, Gut-on-a-chip, In vitro, Transcriptome",

author = "Janneke Elzinga and Menno Grouls and Hooiveld, \{Guido J.E.J.\}",

year = "2023",

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language = "English",

volume = "97",

publisher = "Wageningen University",

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TY - ADVS

T1 - Code for comparison of Caco-2 cell transcriptomes

AU - Elzinga, Janneke

AU - Grouls, Menno

AU - Hooiveld, Guido J.E.J.

PY - 2023/1/11

Y1 - 2023/1/11

N2 - This ZIP-archive contains six files, including R-code, required to analyze array data from the Gene Expression Omnibus. This workflow was used for the paper: Title: Systematic comparison of transcriptomes of Caco-2 cells cultured under different cellular and physiological conditions.Authors: Janneke Elzinga, Menno Grouls, Guido Hooiveld et al. Published in: Archives of Toxicology (2023), DOI: 10.1007/s00204-022-03430-y

AB - This ZIP-archive contains six files, including R-code, required to analyze array data from the Gene Expression Omnibus. This workflow was used for the paper: Title: Systematic comparison of transcriptomes of Caco-2 cells cultured under different cellular and physiological conditions.Authors: Janneke Elzinga, Menno Grouls, Guido Hooiveld et al. Published in: Archives of Toxicology (2023), DOI: 10.1007/s00204-022-03430-y

KW - 3R

KW - Caco-2

KW - Good in vitro method practices

KW - Gut-on-a-chip

KW - In vitro

KW - Transcriptome

U2 - 10.5281/zenodo.7525835

DO - 10.5281/zenodo.7525835

M3 - Software

VL - 97

PB - Wageningen University

ER -

Code for comparison of Caco-2 cell transcriptomes

Abstract

UN SDGs

Keywords

Access to Document

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Research output

Systematic comparison of transcriptomes of Caco-2 cells cultured under different cellular and physiological conditions

Projects

VLAG AIO gut microbiome chip (KB-37-002-020, KB-23-002-036)

Cite this