Blackleg Detection in Potato Plants using Convolutional Neural Networks

Research output: Contribution to conferencePaperAcademicpeer-review

Abstract

Potato blackleg is a tuber-borne bacterial disease caused by species within the genera Dickeya and Pectobacterium that can cause decay of plant tissue and wilting through the action of cell wall degrading enzymes released by the pathogen. In case of serious infections, tubers may rot before emergence. Management is largely based on the use of pathogen-free seed potato tubers. For this, fields are visually monitored both for certification and also to take out diseased plants to avoid spread to neighboring plants. Imaging potentially offers a quick and non-destructive way to inspect the health of potato plants in a field. Early detection of blackleg diseased plants with modern vision techniques can significantly reduce costs. In this paper, we studied the use of deep learning for detecting blackleg diseased potato plants. Two deep convolutional neural networks were trained on RGB images with healthy and diseased plants. One of these networks (ResNet18) was experimentally found to produce a precision of 95 % and recall of 91 % for the disease class. These results show that convolutional neural networks can be used to detect blackleg diseased potato plants.
Original languageEnglish
Number of pages6
Publication statusPublished - 2019
Event6th IFAC Conference on Sensing, Control and Automation Technologies for Agriculture, AgriControl 2019 - Sydney, Australia
Duration: 4 Dec 20196 Dec 2019

Conference

Conference6th IFAC Conference on Sensing, Control and Automation Technologies for Agriculture, AgriControl 2019
CountryAustralia
CitySydney
Period4/12/196/12/19

Fingerprint

neural networks
potatoes
tubers
Pectobacterium
Dickeya
pathogens
seed tubers
wilting
plant tissues
learning
deterioration
cell walls
image analysis
enzymes
infection

Cite this

Afonso, M. V., Blok, P. M., Polder, G., van der Wolf, J. M., & Kamp, J. A. L. M. (2019). Blackleg Detection in Potato Plants using Convolutional Neural Networks. Paper presented at 6th IFAC Conference on Sensing, Control and Automation Technologies for Agriculture, AgriControl 2019, Sydney, Australia.
Afonso, M.V. ; Blok, P.M. ; Polder, G. ; van der Wolf, J.M. ; Kamp, J.A.L.M. / Blackleg Detection in Potato Plants using Convolutional Neural Networks. Paper presented at 6th IFAC Conference on Sensing, Control and Automation Technologies for Agriculture, AgriControl 2019, Sydney, Australia.6 p.
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title = "Blackleg Detection in Potato Plants using Convolutional Neural Networks",
abstract = "Potato blackleg is a tuber-borne bacterial disease caused by species within the genera Dickeya and Pectobacterium that can cause decay of plant tissue and wilting through the action of cell wall degrading enzymes released by the pathogen. In case of serious infections, tubers may rot before emergence. Management is largely based on the use of pathogen-free seed potato tubers. For this, fields are visually monitored both for certification and also to take out diseased plants to avoid spread to neighboring plants. Imaging potentially offers a quick and non-destructive way to inspect the health of potato plants in a field. Early detection of blackleg diseased plants with modern vision techniques can significantly reduce costs. In this paper, we studied the use of deep learning for detecting blackleg diseased potato plants. Two deep convolutional neural networks were trained on RGB images with healthy and diseased plants. One of these networks (ResNet18) was experimentally found to produce a precision of 95 {\%} and recall of 91 {\%} for the disease class. These results show that convolutional neural networks can be used to detect blackleg diseased potato plants.",
author = "M.V. Afonso and P.M. Blok and G. Polder and {van der Wolf}, J.M. and J.A.L.M. Kamp",
year = "2019",
language = "English",
note = "6th IFAC Conference on Sensing, Control and Automation Technologies for Agriculture, AgriControl 2019 ; Conference date: 04-12-2019 Through 06-12-2019",

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Afonso, MV, Blok, PM, Polder, G, van der Wolf, JM & Kamp, JALM 2019, 'Blackleg Detection in Potato Plants using Convolutional Neural Networks' Paper presented at 6th IFAC Conference on Sensing, Control and Automation Technologies for Agriculture, AgriControl 2019, Sydney, Australia, 4/12/19 - 6/12/19, .

Blackleg Detection in Potato Plants using Convolutional Neural Networks. / Afonso, M.V.; Blok, P.M.; Polder, G.; van der Wolf, J.M.; Kamp, J.A.L.M.

2019. Paper presented at 6th IFAC Conference on Sensing, Control and Automation Technologies for Agriculture, AgriControl 2019, Sydney, Australia.

Research output: Contribution to conferencePaperAcademicpeer-review

TY - CONF

T1 - Blackleg Detection in Potato Plants using Convolutional Neural Networks

AU - Afonso, M.V.

AU - Blok, P.M.

AU - Polder, G.

AU - van der Wolf, J.M.

AU - Kamp, J.A.L.M.

PY - 2019

Y1 - 2019

N2 - Potato blackleg is a tuber-borne bacterial disease caused by species within the genera Dickeya and Pectobacterium that can cause decay of plant tissue and wilting through the action of cell wall degrading enzymes released by the pathogen. In case of serious infections, tubers may rot before emergence. Management is largely based on the use of pathogen-free seed potato tubers. For this, fields are visually monitored both for certification and also to take out diseased plants to avoid spread to neighboring plants. Imaging potentially offers a quick and non-destructive way to inspect the health of potato plants in a field. Early detection of blackleg diseased plants with modern vision techniques can significantly reduce costs. In this paper, we studied the use of deep learning for detecting blackleg diseased potato plants. Two deep convolutional neural networks were trained on RGB images with healthy and diseased plants. One of these networks (ResNet18) was experimentally found to produce a precision of 95 % and recall of 91 % for the disease class. These results show that convolutional neural networks can be used to detect blackleg diseased potato plants.

AB - Potato blackleg is a tuber-borne bacterial disease caused by species within the genera Dickeya and Pectobacterium that can cause decay of plant tissue and wilting through the action of cell wall degrading enzymes released by the pathogen. In case of serious infections, tubers may rot before emergence. Management is largely based on the use of pathogen-free seed potato tubers. For this, fields are visually monitored both for certification and also to take out diseased plants to avoid spread to neighboring plants. Imaging potentially offers a quick and non-destructive way to inspect the health of potato plants in a field. Early detection of blackleg diseased plants with modern vision techniques can significantly reduce costs. In this paper, we studied the use of deep learning for detecting blackleg diseased potato plants. Two deep convolutional neural networks were trained on RGB images with healthy and diseased plants. One of these networks (ResNet18) was experimentally found to produce a precision of 95 % and recall of 91 % for the disease class. These results show that convolutional neural networks can be used to detect blackleg diseased potato plants.

M3 - Paper

ER -

Afonso MV, Blok PM, Polder G, van der Wolf JM, Kamp JALM. Blackleg Detection in Potato Plants using Convolutional Neural Networks. 2019. Paper presented at 6th IFAC Conference on Sensing, Control and Automation Technologies for Agriculture, AgriControl 2019, Sydney, Australia.