Automated assembly of species metabolomes through data submission into a public repository

Reza Salek, Pablo Conesa, Keeva Cochrane, Kenneth Haug, M. Williams, Namrata Kale, P. Moreno, Kalai Vanii Jayaseelan, Jose Ramon Macias, Venkata Chandrasekhar Nainala, R.D. Hall, Laura Reed, Mark Viant, C. Donovan, Christoph Steinbeck

Research output: Contribution to journalLetterAcademicpeer-review

4 Citations (Scopus)

Abstract

Following similar global efforts to exchange genomic and other biomedical data, global databases in metabolomics have now been established. MetaboLights, the first general purpose, publically available, cross-species, cross-application database in metabolomics, has become the fastest growing data repository at the European Bioinformatics Institute in terms of data volume. Here we present the automated assembly of species metabolomes in MetaboLights, a crucial reference for chemical biology, which is growing through user submissions.
Original languageEnglish
Article numbergix062
Number of pages4
JournalGigaScience
Volume6
Issue number8
DOIs
Publication statusPublished - 1 Aug 2017

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Metabolomics
Metabolome
Databases
Bioinformatics
Computational Biology

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Salek, R., Conesa, P., Cochrane, K., Haug, K., Williams, M., Kale, N., ... Steinbeck, C. (2017). Automated assembly of species metabolomes through data submission into a public repository. GigaScience, 6(8), [gix062]. https://doi.org/10.1093/gigascience/gix062
Salek, Reza ; Conesa, Pablo ; Cochrane, Keeva ; Haug, Kenneth ; Williams, M. ; Kale, Namrata ; Moreno, P. ; Jayaseelan, Kalai Vanii ; Macias, Jose Ramon ; Nainala, Venkata Chandrasekhar ; Hall, R.D. ; Reed, Laura ; Viant, Mark ; Donovan, C. ; Steinbeck, Christoph. / Automated assembly of species metabolomes through data submission into a public repository. In: GigaScience. 2017 ; Vol. 6, No. 8.
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Salek, R, Conesa, P, Cochrane, K, Haug, K, Williams, M, Kale, N, Moreno, P, Jayaseelan, KV, Macias, JR, Nainala, VC, Hall, RD, Reed, L, Viant, M, Donovan, C & Steinbeck, C 2017, 'Automated assembly of species metabolomes through data submission into a public repository', GigaScience, vol. 6, no. 8, gix062. https://doi.org/10.1093/gigascience/gix062

Automated assembly of species metabolomes through data submission into a public repository. / Salek, Reza; Conesa, Pablo; Cochrane, Keeva; Haug, Kenneth; Williams, M.; Kale, Namrata; Moreno, P.; Jayaseelan, Kalai Vanii; Macias, Jose Ramon; Nainala, Venkata Chandrasekhar; Hall, R.D.; Reed, Laura; Viant, Mark; Donovan, C.; Steinbeck, Christoph.

In: GigaScience, Vol. 6, No. 8, gix062, 01.08.2017.

Research output: Contribution to journalLetterAcademicpeer-review

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T1 - Automated assembly of species metabolomes through data submission into a public repository

AU - Salek, Reza

AU - Conesa, Pablo

AU - Cochrane, Keeva

AU - Haug, Kenneth

AU - Williams, M.

AU - Kale, Namrata

AU - Moreno, P.

AU - Jayaseelan, Kalai Vanii

AU - Macias, Jose Ramon

AU - Nainala, Venkata Chandrasekhar

AU - Hall, R.D.

AU - Reed, Laura

AU - Viant, Mark

AU - Donovan, C.

AU - Steinbeck, Christoph

PY - 2017/8/1

Y1 - 2017/8/1

N2 - Following similar global efforts to exchange genomic and other biomedical data, global databases in metabolomics have now been established. MetaboLights, the first general purpose, publically available, cross-species, cross-application database in metabolomics, has become the fastest growing data repository at the European Bioinformatics Institute in terms of data volume. Here we present the automated assembly of species metabolomes in MetaboLights, a crucial reference for chemical biology, which is growing through user submissions.

AB - Following similar global efforts to exchange genomic and other biomedical data, global databases in metabolomics have now been established. MetaboLights, the first general purpose, publically available, cross-species, cross-application database in metabolomics, has become the fastest growing data repository at the European Bioinformatics Institute in terms of data volume. Here we present the automated assembly of species metabolomes in MetaboLights, a crucial reference for chemical biology, which is growing through user submissions.

U2 - 10.1093/gigascience/gix062

DO - 10.1093/gigascience/gix062

M3 - Letter

VL - 6

JO - GigaScience

JF - GigaScience

SN - 2047-217X

IS - 8

M1 - gix062

ER -