Automated assembly of species metabolomes through data submission into a public repository

Reza Salek; Pablo Conesa; Keeva Cochrane; Kenneth Haug; M. Williams; Namrata Kale; P. Moreno; Kalai Vanii Jayaseelan; Jose Ramon Macias; Venkata Chandrasekhar Nainala; R.D. Hall; Laura Reed; Mark Viant; C. Donovan; Christoph Steinbeck

doi:10.1093/gigascience/gix062

Automated assembly of species metabolomes through data submission into a public repository

Reza Salek, Pablo Conesa, Keeva Cochrane, Kenneth Haug, M. Williams, Namrata Kale, P. Moreno, Kalai Vanii Jayaseelan, Jose Ramon Macias, Venkata Chandrasekhar Nainala, R.D. Hall, Laura Reed, Mark Viant, C. Donovan, Christoph Steinbeck^*

^*Corresponding author for this work

Research output: Contribution to journal › Letter › Academic › peer-review

6 Citations (Scopus)

Abstract

Following similar global efforts to exchange genomic and other biomedical data, global databases in metabolomics have now been established. MetaboLights, the first general purpose, publically available, cross-species, cross-application database in metabolomics, has become the fastest growing data repository at the European Bioinformatics Institute in terms of data volume. Here we present the automated assembly of species metabolomes in MetaboLights, a crucial reference for chemical biology, which is growing through user submissions.

Original language	English
Article number	gix062
Number of pages	4
Journal	GigaScience
Volume	6
Issue number	8
DOIs	https://doi.org/10.1093/gigascience/gix062
Publication status	Published - 1 Aug 2017

Keywords

Curation
Databases
Metabolomics
Species metabolomes

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10.1093/gigascience/gix062Licence: CC BY

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Salek, R., Conesa, P., Cochrane, K., Haug, K., Williams, M., Kale, N., Moreno, P., Jayaseelan, K. V., Macias, J. R., Nainala, V. C., Hall, R. D., Reed, L., Viant, M., Donovan, C., & Steinbeck, C. (2017). Automated assembly of species metabolomes through data submission into a public repository. GigaScience, 6(8), Article gix062. https://doi.org/10.1093/gigascience/gix062

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abstract = "Following similar global efforts to exchange genomic and other biomedical data, global databases in metabolomics have now been established. MetaboLights, the first general purpose, publically available, cross-species, cross-application database in metabolomics, has become the fastest growing data repository at the European Bioinformatics Institute in terms of data volume. Here we present the automated assembly of species metabolomes in MetaboLights, a crucial reference for chemical biology, which is growing through user submissions.",

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doi = "10.1093/gigascience/gix062",

language = "English",

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AU - Salek, Reza

AU - Conesa, Pablo

AU - Cochrane, Keeva

AU - Haug, Kenneth

AU - Williams, M.

AU - Kale, Namrata

AU - Moreno, P.

AU - Jayaseelan, Kalai Vanii

AU - Macias, Jose Ramon

AU - Nainala, Venkata Chandrasekhar

AU - Hall, R.D.

AU - Reed, Laura

AU - Viant, Mark

AU - Donovan, C.

AU - Steinbeck, Christoph

PY - 2017/8/1

Y1 - 2017/8/1

N2 - Following similar global efforts to exchange genomic and other biomedical data, global databases in metabolomics have now been established. MetaboLights, the first general purpose, publically available, cross-species, cross-application database in metabolomics, has become the fastest growing data repository at the European Bioinformatics Institute in terms of data volume. Here we present the automated assembly of species metabolomes in MetaboLights, a crucial reference for chemical biology, which is growing through user submissions.

AB - Following similar global efforts to exchange genomic and other biomedical data, global databases in metabolomics have now been established. MetaboLights, the first general purpose, publically available, cross-species, cross-application database in metabolomics, has become the fastest growing data repository at the European Bioinformatics Institute in terms of data volume. Here we present the automated assembly of species metabolomes in MetaboLights, a crucial reference for chemical biology, which is growing through user submissions.

KW - Curation

KW - Databases

KW - Metabolomics

KW - Species metabolomes

U2 - 10.1093/gigascience/gix062

DO - 10.1093/gigascience/gix062

M3 - Letter

SN - 2047-217X

VL - 6

JO - GigaScience

JF - GigaScience

IS - 8

M1 - gix062

ER -

Automated assembly of species metabolomes through data submission into a public repository

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