Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America

L.R. Castellanos; Linda Van Der Graaf-Van Bloois; Pilar Donado-Godoy; K.T. Veldman; Francisco  Duarte; María T. Acuña; Claudia Jarquín; Francois Xavier Weill; D.J. Mevius; J.A. Wagenaar; Joost Hordijk; Aldert L. Zomer

doi:10.3201/eid2606.191121

Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America

L.R. Castellanos
, Linda Van Der Graaf-Van Bloois
, Pilar Donado-Godoy
, K.T. Veldman
, Francisco Duarte
, María T. Acuña
, Claudia Jarquín
, Francois Xavier Weill
, D.J. Mevius
, J.A. Wagenaar
, Joost Hordijk
, Aldert L. Zomer^*

^*Corresponding author for this work

Epidemiology, Bio-informatics & Animal models

Research output: Contribution to journal › Article › Academic › peer-review

15 Citations (Scopus)

Abstract

Salmonella enterica serovar Paratyphi B variant Java sequence type 28 is prevalent in poultry and poultry meat. We investigated the evolutionary relatedness between sequence type 28 strains from Europe and Latin America using time-resolved phylogeny and principal component analysis. We sequenced isolates from Colombia, Guatemala, Costa Rica, and the Netherlands and complemented them with publicly available genomes from Europe, Africa, and the Middle East. Phylogenetic time trees and effective population sizes (Ne) showed separate clustering of strains from Latin America and Europe. The separation is estimated to have occurred during the 1980s. Ne of strains increased sharply in Europe around 1995 and in Latin America around 2005. Principal component analysis on noncore genes showed a clear distinction between strains from Europe and Latin America, whereas the plasmid gene content was similar. Regardless of the evolutionary separation, similar features of resistance to β-lactams and quinolones/fluoroquinolones indicated parallel evolution of antimicrobial resistance in both regions

Original language	English
Pages (from-to)	1164-1173
Journal	Emerging Infectious Diseases
Volume	26
Issue number	6
DOIs	https://doi.org/10.3201/eid2606.191121
Publication status	Published - Jun 2020

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SDG 3 Good Health and Well-being

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https://edepot.wur.nl/530975Licence: CC BY

Increased dissemination and parallel evolution of antimicrobial resistance in Salmonella enterica serovar Paratyphi B variant Java in poultry from Europe and Latin America
Castellanos, L. R. (Creator), Van Der Graaf-Van Bloois, L. (Creator), Donado-Godoy, P. (Creator), Veldman, K. T. (Creator), Duarte, F. (Creator), Acuña, M. T. (Creator), Jarquín, C. (Creator), Weill, F. X. (Creator), Mevius, D. J. (Creator), Wagenaar, J. A. (Creator), Hordijk, J. (Creator) & Zomer, A. L. (Creator), Utrecht University, 4 May 2019
https://www.ebi.ac.uk/ena/browser/view/PRJEB31547
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Castellanos, L. R., Van Der Graaf-Van Bloois, L., Donado-Godoy, P., Veldman, K. T., Duarte, F., Acuña, M. T., Jarquín, C., Weill, F. X., Mevius, D. J., Wagenaar, J. A., Hordijk, J., & Zomer, A. L. (2020). Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America. Emerging Infectious Diseases, 26(6), 1164-1173. https://doi.org/10.3201/eid2606.191121

@article{9864a6a08b90423c8e347e332fb2e5f6,

title = "Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America",

abstract = "Salmonella enterica serovar Paratyphi B variant Java sequence type 28 is prevalent in poultry and poultry meat. We investigated the evolutionary relatedness between sequence type 28 strains from Europe and Latin America using time-resolved phylogeny and principal component analysis. We sequenced isolates from Colombia, Guatemala, Costa Rica, and the Netherlands and complemented them with publicly available genomes from Europe, Africa, and the Middle East. Phylogenetic time trees and effective population sizes (Ne) showed separate clustering of strains from Latin America and Europe. The separation is estimated to have occurred during the 1980s. Ne of strains increased sharply in Europe around 1995 and in Latin America around 2005. Principal component analysis on noncore genes showed a clear distinction between strains from Europe and Latin America, whereas the plasmid gene content was similar. Regardless of the evolutionary separation, similar features of resistance to β-lactams and quinolones/fluoroquinolones indicated parallel evolution of antimicrobial resistance in both regions",

author = "L.R. Castellanos and \{Van Der Graaf-Van Bloois\}, Linda and Pilar Donado-Godoy and K.T. Veldman and Francisco Duarte and Acu{\~n}a, \{Mar{\'i}a T.\} and Claudia Jarqu{\'i}n and Weill, \{Francois Xavier\} and D.J. Mevius and J.A. Wagenaar and Joost Hordijk and Zomer, \{Aldert L.\}",

year = "2020",

month = jun,

doi = "10.3201/eid2606.191121",

language = "English",

volume = "26",

pages = "1164--1173",

journal = "Emerging Infectious Diseases",

issn = "1080-6040",

publisher = "Centers for Disease Control and Prevention (CDC)",

number = "6",

}

Castellanos, LR, Van Der Graaf-Van Bloois, L, Donado-Godoy, P, Veldman, KT, Duarte, F, Acuña, MT, Jarquín, C, Weill, FX, Mevius, DJ, Wagenaar, JA, Hordijk, J & Zomer, AL 2020, 'Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America', Emerging Infectious Diseases, vol. 26, no. 6, pp. 1164-1173. https://doi.org/10.3201/eid2606.191121

TY - JOUR

T1 - Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America

AU - Castellanos, L.R.

AU - Van Der Graaf-Van Bloois, Linda

AU - Donado-Godoy, Pilar

AU - Veldman, K.T.

AU - Duarte, Francisco

AU - Acuña, María T.

AU - Jarquín, Claudia

AU - Weill, Francois Xavier

AU - Mevius, D.J.

AU - Wagenaar, J.A.

AU - Hordijk, Joost

AU - Zomer, Aldert L.

PY - 2020/6

Y1 - 2020/6

N2 - Salmonella enterica serovar Paratyphi B variant Java sequence type 28 is prevalent in poultry and poultry meat. We investigated the evolutionary relatedness between sequence type 28 strains from Europe and Latin America using time-resolved phylogeny and principal component analysis. We sequenced isolates from Colombia, Guatemala, Costa Rica, and the Netherlands and complemented them with publicly available genomes from Europe, Africa, and the Middle East. Phylogenetic time trees and effective population sizes (Ne) showed separate clustering of strains from Latin America and Europe. The separation is estimated to have occurred during the 1980s. Ne of strains increased sharply in Europe around 1995 and in Latin America around 2005. Principal component analysis on noncore genes showed a clear distinction between strains from Europe and Latin America, whereas the plasmid gene content was similar. Regardless of the evolutionary separation, similar features of resistance to β-lactams and quinolones/fluoroquinolones indicated parallel evolution of antimicrobial resistance in both regions

AB - Salmonella enterica serovar Paratyphi B variant Java sequence type 28 is prevalent in poultry and poultry meat. We investigated the evolutionary relatedness between sequence type 28 strains from Europe and Latin America using time-resolved phylogeny and principal component analysis. We sequenced isolates from Colombia, Guatemala, Costa Rica, and the Netherlands and complemented them with publicly available genomes from Europe, Africa, and the Middle East. Phylogenetic time trees and effective population sizes (Ne) showed separate clustering of strains from Latin America and Europe. The separation is estimated to have occurred during the 1980s. Ne of strains increased sharply in Europe around 1995 and in Latin America around 2005. Principal component analysis on noncore genes showed a clear distinction between strains from Europe and Latin America, whereas the plasmid gene content was similar. Regardless of the evolutionary separation, similar features of resistance to β-lactams and quinolones/fluoroquinolones indicated parallel evolution of antimicrobial resistance in both regions

U2 - 10.3201/eid2606.191121

DO - 10.3201/eid2606.191121

M3 - Article

SN - 1080-6040

VL - 26

SP - 1164

EP - 1173

JO - Emerging Infectious Diseases

JF - Emerging Infectious Diseases

IS - 6

ER -

Antimicrobial Resistance in Salmonella enterica Serovar Paratyphi B Variant Java in Poultry from Europe and Latin America

Abstract

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Increased dissemination and parallel evolution of antimicrobial resistance in Salmonella enterica serovar Paratyphi B variant Java in poultry from Europe and Latin America

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