A novel ligand-binding domain involved in allosteric regulation of amino acid metabolism in prokaryotes

T.J.G. Ettema, A.B. Brinkman, T.H. Tani, J.B. Rafferty, J. van der Oost

Research output: Contribution to journalArticleAcademicpeer-review

61 Citations (Scopus)

Abstract

A combination of sequence profile searching and structural protein analysis has revealed a novel type of small molecule binding domain that is involved in the allosteric regulation of prokaryotic amino acid metabolism. This domain, designated RAM, has been found to be fused to the DNA-binding domain of Lrp-like transcription regulators and to the catalytic domain of some metabolic enzymes, and has been found as a stand-alone module. Structural analysis of the RAM domain of Lrp reveals a -fold that is strikingly similar to that of the recently described ACT domain, a ubiquitous allosteric regulatory domain of many metabolic enzymes. However, structural alignment and re-evaluation of previous mutagenesis data suggest that the effector-binding sites of both modules are significantly different. By assuming that the RAM and ACT domains originated from a common ancestor, these observations suggest that their ligand-binding sites have evolved independently. Both domains appear to play analogous roles in controlling key steps in amino acid metabolism at the level of gene expression as well as enzyme activity.
Original languageEnglish
Pages (from-to)37464-37468
JournalJournal of Biological Chemistry
Volume277
Issue number40
DOIs
Publication statusPublished - 2002

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