A higher-level phylogenetic classification of the Fungi

D.S. Hibbett, M. Binder, J.F. Bischoff, M. Blackwell, P.F. Cannon, O.E. Eriksson, S. Huhndorf, T. James, P.M. Kirk, R. Lücking, H. Thorsten Lumbsch, F. Lutzoni, P. Brandon Matheny, D.J. McLaughlin, M.J. Powell, S. Redhead, C.L. Schoch, J.W. Spatafora, J.A. Stalpers, R. VilgalysM.C. Aime, A. Aptroot, R. Bauer, D. Begerow, G.L. Benny, L.A. Castlebury, P.W. Crous, Y.C. Dai, W. Gams, D.M. Geiser, G.W. Griffith, C. Gueidan, D.L. Hawksworth, G. Hestmark, K. Hosaka, R.A. Humber, K.D. Hyde, J.E. Ironside, U. Koljalg, C.P. Kurtzman, K.H. Larsson, R. Lichtwardt, J. Longcore, J. Miadlikowska, A. Miller, J.M. Moncalvo, S. Mozley-Standridge, F. Oberwinkler, E. Parmasto, V. Reeb, J.D. Rogers, C. Le Roux, L. Ryvarden, J.P. Sampaio, A. Schüssler, J. Sugiyama, R.G. Thorn, L. Tibell, W.A. Untereiner, C. Walker, Z. Wang, A. Weir, M. Weiss, M.M. White, K. Winka, Y.J. Yao, N. Zhang

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1385 Citations (Scopus)

Abstract

A comprehensive phylogenetic classification of the kingdom Fungi is proposed, with reference to recent molecular phylogenetic analyses, and with input from diverse members of the fungal taxonomic community. The classification includes 195 taxa, down to the level of order, of which 16 are described or validated here: Dikarya subkingdom nov.; Chytridiomycota, Neocallimastigomycota phyla nov.; Monoblepharidomycetes, Neocallimastigomycetes class. nov.; Eurotiomycetidae, Lecarioromycetidae, Mycocaliciomycetidae subclass. nov.; Acarosporales, Corticiales, Baeomycetales, Candelariales, Gloeophyllales, Melanosporales, Trechisporales, Umbilicariales ords. nov. The clade containing Ascomycota and Basidiomycota is classified as subkingdom Dikarya, reflecting the putative synapomorphy of dikaryotic hyphae. The most dramatic shifts in the classification relative to previous works concern the groups that have traditionally been included in the Chytridiomycota and Zygomycota. The Chytridiomycota is retained in a restricted sense, with Blastocladiomycota and Neocallimastigomycota representing segregate phyla of flagellated Fungi. Taxa traditionally placed in Zygomycota are distributed among Glomeromycota and several subphyla incertae sedis, including Mucoromycotina, Entomophthoromycotina, Kickxellomycotina, and Zoopagomycotiria. Microsporidia are included in the Fungi, but no further subdivision of the group is proposed. Several genera of 'basal' Fungi of uncertain position are not placed in any higher taxa, including Basidiobolus, Caulochytrium, Olpidium, and Rozella. (c) 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.
Original languageEnglish
Pages (from-to)509-547
JournalMycological Research
Volume111
Issue number5
DOIs
Publication statusPublished - 2007

Keywords

  • ribosomal dna-sequences
  • lsu rdna sequences
  • molecular phylogeny
  • ord-nov
  • mitochondrial sequences
  • natural classification
  • basidiomycetous yeasts
  • bayesian-analysis
  • large subunits
  • nuclear rdna

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