A higher-level phylogenetic classification of the Fungi

D.S. Hibbett; M. Binder; J.F. Bischoff; M. Blackwell; P.F. Cannon; O.E. Eriksson; S. Huhndorf; T. James; P.M. Kirk; R. Lücking; H. Thorsten Lumbsch; F. Lutzoni; P. Brandon Matheny; D.J. McLaughlin; M.J. Powell; S. Redhead; C.L. Schoch; J.W. Spatafora; J.A. Stalpers; R. Vilgalys; M.C. Aime; A. Aptroot; R. Bauer; D. Begerow; G.L. Benny; L.A. Castlebury; P.W. Crous; Y.C. Dai; W. Gams; D.M. Geiser; G.W. Griffith; C. Gueidan; D.L. Hawksworth; G. Hestmark; K. Hosaka; R.A. Humber; K.D. Hyde; J.E. Ironside; U. Koljalg; C.P. Kurtzman; K.H. Larsson; R. Lichtwardt; J. Longcore; J. Miadlikowska; A. Miller; J.M. Moncalvo; S. Mozley-Standridge; F. Oberwinkler; E. Parmasto; V. Reeb; J.D. Rogers; C. Le Roux; L. Ryvarden; J.P. Sampaio; A. Schüssler; J. Sugiyama; R.G. Thorn; L. Tibell; W.A. Untereiner; C. Walker; Z. Wang; A. Weir; M. Weiss; M.M. White; K. Winka; Y.J. Yao; N. Zhang

doi:10.1016/j.mycres.2007.03.004

A higher-level phylogenetic classification of the Fungi

D.S. Hibbett, M. Binder, J.F. Bischoff, M. Blackwell, P.F. Cannon, O.E. Eriksson, S. Huhndorf, T. James, P.M. Kirk, R. Lücking, H. Thorsten Lumbsch, F. Lutzoni, P. Brandon Matheny, D.J. McLaughlin, M.J. Powell, S. Redhead, C.L. Schoch, J.W. Spatafora, J.A. Stalpers, R. VilgalysM.C. Aime, A. Aptroot, R. Bauer, D. Begerow, G.L. Benny, L.A. Castlebury, P.W. Crous, Y.C. Dai, W. Gams, D.M. Geiser, G.W. Griffith, C. Gueidan, D.L. Hawksworth, G. Hestmark, K. Hosaka, R.A. Humber, K.D. Hyde, J.E. Ironside, U. Koljalg, C.P. Kurtzman, K.H. Larsson, R. Lichtwardt, J. Longcore, J. Miadlikowska, A. Miller, J.M. Moncalvo, S. Mozley-Standridge, F. Oberwinkler, E. Parmasto, V. Reeb, J.D. Rogers, C. Le Roux, L. Ryvarden, J.P. Sampaio, A. Schüssler, J. Sugiyama, R.G. Thorn, L. Tibell, W.A. Untereiner, C. Walker, Z. Wang, A. Weir, M. Weiss, M.M. White, K. Winka, Y.J. Yao, N. Zhang

Laboratory of Phytopathology

Research output: Contribution to journal › Article › Academic › peer-review

1687 Citations (Scopus)

Abstract

A comprehensive phylogenetic classification of the kingdom Fungi is proposed, with reference to recent molecular phylogenetic analyses, and with input from diverse members of the fungal taxonomic community. The classification includes 195 taxa, down to the level of order, of which 16 are described or validated here: Dikarya subkingdom nov.; Chytridiomycota, Neocallimastigomycota phyla nov.; Monoblepharidomycetes, Neocallimastigomycetes class. nov.; Eurotiomycetidae, Lecarioromycetidae, Mycocaliciomycetidae subclass. nov.; Acarosporales, Corticiales, Baeomycetales, Candelariales, Gloeophyllales, Melanosporales, Trechisporales, Umbilicariales ords. nov. The clade containing Ascomycota and Basidiomycota is classified as subkingdom Dikarya, reflecting the putative synapomorphy of dikaryotic hyphae. The most dramatic shifts in the classification relative to previous works concern the groups that have traditionally been included in the Chytridiomycota and Zygomycota. The Chytridiomycota is retained in a restricted sense, with Blastocladiomycota and Neocallimastigomycota representing segregate phyla of flagellated Fungi. Taxa traditionally placed in Zygomycota are distributed among Glomeromycota and several subphyla incertae sedis, including Mucoromycotina, Entomophthoromycotina, Kickxellomycotina, and Zoopagomycotiria. Microsporidia are included in the Fungi, but no further subdivision of the group is proposed. Several genera of 'basal' Fungi of uncertain position are not placed in any higher taxa, including Basidiobolus, Caulochytrium, Olpidium, and Rozella. (c) 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.

Original language	English
Pages (from-to)	509-547
Journal	Mycological Research
Volume	111
Issue number	5
DOIs	https://doi.org/10.1016/j.mycres.2007.03.004
Publication status	Published - 2007

Keywords

ribosomal dna-sequences
lsu rdna sequences
molecular phylogeny
ord-nov
mitochondrial sequences
natural classification
basidiomycetous yeasts
bayesian-analysis
large subunits
nuclear rdna

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10.1016/j.mycres.2007.03.004

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Hibbett, D. S., Binder, M., Bischoff, J. F., Blackwell, M., Cannon, P. F., Eriksson, O. E., Huhndorf, S., James, T., Kirk, P. M., Lücking, R., Thorsten Lumbsch, H., Lutzoni, F., Brandon Matheny, P., McLaughlin, D. J., Powell, M. J., Redhead, S., Schoch, C. L., Spatafora, J. W., Stalpers, J. A., ... Zhang, N. (2007). A higher-level phylogenetic classification of the Fungi. Mycological Research, 111(5), 509-547. https://doi.org/10.1016/j.mycres.2007.03.004

@article{a132e9c10fe74118b259ff7c690360d1,

title = "A higher-level phylogenetic classification of the Fungi",

abstract = "A comprehensive phylogenetic classification of the kingdom Fungi is proposed, with reference to recent molecular phylogenetic analyses, and with input from diverse members of the fungal taxonomic community. The classification includes 195 taxa, down to the level of order, of which 16 are described or validated here: Dikarya subkingdom nov.; Chytridiomycota, Neocallimastigomycota phyla nov.; Monoblepharidomycetes, Neocallimastigomycetes class. nov.; Eurotiomycetidae, Lecarioromycetidae, Mycocaliciomycetidae subclass. nov.; Acarosporales, Corticiales, Baeomycetales, Candelariales, Gloeophyllales, Melanosporales, Trechisporales, Umbilicariales ords. nov. The clade containing Ascomycota and Basidiomycota is classified as subkingdom Dikarya, reflecting the putative synapomorphy of dikaryotic hyphae. The most dramatic shifts in the classification relative to previous works concern the groups that have traditionally been included in the Chytridiomycota and Zygomycota. The Chytridiomycota is retained in a restricted sense, with Blastocladiomycota and Neocallimastigomycota representing segregate phyla of flagellated Fungi. Taxa traditionally placed in Zygomycota are distributed among Glomeromycota and several subphyla incertae sedis, including Mucoromycotina, Entomophthoromycotina, Kickxellomycotina, and Zoopagomycotiria. Microsporidia are included in the Fungi, but no further subdivision of the group is proposed. Several genera of 'basal' Fungi of uncertain position are not placed in any higher taxa, including Basidiobolus, Caulochytrium, Olpidium, and Rozella. (c) 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.",

keywords = "ribosomal dna-sequences, lsu rdna sequences, molecular phylogeny, ord-nov, mitochondrial sequences, natural classification, basidiomycetous yeasts, bayesian-analysis, large subunits, nuclear rdna",

author = "D.S. Hibbett and M. Binder and J.F. Bischoff and M. Blackwell and P.F. Cannon and O.E. Eriksson and S. Huhndorf and T. James and P.M. Kirk and R. L{\"u}cking and {Thorsten Lumbsch}, H. and F. Lutzoni and {Brandon Matheny}, P. and D.J. McLaughlin and M.J. Powell and S. Redhead and C.L. Schoch and J.W. Spatafora and J.A. Stalpers and R. Vilgalys and M.C. Aime and A. Aptroot and R. Bauer and D. Begerow and G.L. Benny and L.A. Castlebury and P.W. Crous and Y.C. Dai and W. Gams and D.M. Geiser and G.W. Griffith and C. Gueidan and D.L. Hawksworth and G. Hestmark and K. Hosaka and R.A. Humber and K.D. Hyde and J.E. Ironside and U. Koljalg and C.P. Kurtzman and K.H. Larsson and R. Lichtwardt and J. Longcore and J. Miadlikowska and A. Miller and J.M. Moncalvo and S. Mozley-Standridge and F. Oberwinkler and E. Parmasto and V. Reeb and J.D. Rogers and {Le Roux}, C. and L. Ryvarden and J.P. Sampaio and A. Sch{\"u}ssler and J. Sugiyama and R.G. Thorn and L. Tibell and W.A. Untereiner and C. Walker and Z. Wang and A. Weir and M. Weiss and M.M. White and K. Winka and Y.J. Yao and N. Zhang",

year = "2007",

doi = "10.1016/j.mycres.2007.03.004",

language = "English",

volume = "111",

pages = "509--547",

journal = "Mycological Research",

issn = "0953-7562",

publisher = "Elsevier",

number = "5",

}

Hibbett, DS, Binder, M, Bischoff, JF, Blackwell, M, Cannon, PF, Eriksson, OE, Huhndorf, S, James, T, Kirk, PM, Lücking, R, Thorsten Lumbsch, H, Lutzoni, F, Brandon Matheny, P, McLaughlin, DJ, Powell, MJ, Redhead, S, Schoch, CL, Spatafora, JW, Stalpers, JA, Vilgalys, R, Aime, MC, Aptroot, A, Bauer, R, Begerow, D, Benny, GL, Castlebury, LA, Crous, PW, Dai, YC, Gams, W, Geiser, DM, Griffith, GW, Gueidan, C, Hawksworth, DL, Hestmark, G, Hosaka, K, Humber, RA, Hyde, KD, Ironside, JE, Koljalg, U, Kurtzman, CP, Larsson, KH, Lichtwardt, R, Longcore, J, Miadlikowska, J, Miller, A, Moncalvo, JM, Mozley-Standridge, S, Oberwinkler, F, Parmasto, E, Reeb, V, Rogers, JD, Le Roux, C, Ryvarden, L, Sampaio, JP, Schüssler, A, Sugiyama, J, Thorn, RG, Tibell, L, Untereiner, WA, Walker, C, Wang, Z, Weir, A, Weiss, M, White, MM, Winka, K, Yao, YJ & Zhang, N 2007, 'A higher-level phylogenetic classification of the Fungi', Mycological Research, vol. 111, no. 5, pp. 509-547. https://doi.org/10.1016/j.mycres.2007.03.004

TY - JOUR

T1 - A higher-level phylogenetic classification of the Fungi

AU - Hibbett, D.S.

AU - Binder, M.

AU - Bischoff, J.F.

AU - Blackwell, M.

AU - Cannon, P.F.

AU - Eriksson, O.E.

AU - Huhndorf, S.

AU - James, T.

AU - Kirk, P.M.

AU - Lücking, R.

AU - Thorsten Lumbsch, H.

AU - Lutzoni, F.

AU - Brandon Matheny, P.

AU - McLaughlin, D.J.

AU - Powell, M.J.

AU - Redhead, S.

AU - Schoch, C.L.

AU - Spatafora, J.W.

AU - Stalpers, J.A.

AU - Vilgalys, R.

AU - Aime, M.C.

AU - Aptroot, A.

AU - Bauer, R.

AU - Begerow, D.

AU - Benny, G.L.

AU - Castlebury, L.A.

AU - Crous, P.W.

AU - Dai, Y.C.

AU - Gams, W.

AU - Geiser, D.M.

AU - Griffith, G.W.

AU - Gueidan, C.

AU - Hawksworth, D.L.

AU - Hestmark, G.

AU - Hosaka, K.

AU - Humber, R.A.

AU - Hyde, K.D.

AU - Ironside, J.E.

AU - Koljalg, U.

AU - Kurtzman, C.P.

AU - Larsson, K.H.

AU - Lichtwardt, R.

AU - Longcore, J.

AU - Miadlikowska, J.

AU - Miller, A.

AU - Moncalvo, J.M.

AU - Mozley-Standridge, S.

AU - Oberwinkler, F.

AU - Parmasto, E.

AU - Reeb, V.

AU - Rogers, J.D.

AU - Le Roux, C.

AU - Ryvarden, L.

AU - Sampaio, J.P.

AU - Schüssler, A.

AU - Sugiyama, J.

AU - Thorn, R.G.

AU - Tibell, L.

AU - Untereiner, W.A.

AU - Walker, C.

AU - Wang, Z.

AU - Weir, A.

AU - Weiss, M.

AU - White, M.M.

AU - Winka, K.

AU - Yao, Y.J.

AU - Zhang, N.

PY - 2007

Y1 - 2007

N2 - A comprehensive phylogenetic classification of the kingdom Fungi is proposed, with reference to recent molecular phylogenetic analyses, and with input from diverse members of the fungal taxonomic community. The classification includes 195 taxa, down to the level of order, of which 16 are described or validated here: Dikarya subkingdom nov.; Chytridiomycota, Neocallimastigomycota phyla nov.; Monoblepharidomycetes, Neocallimastigomycetes class. nov.; Eurotiomycetidae, Lecarioromycetidae, Mycocaliciomycetidae subclass. nov.; Acarosporales, Corticiales, Baeomycetales, Candelariales, Gloeophyllales, Melanosporales, Trechisporales, Umbilicariales ords. nov. The clade containing Ascomycota and Basidiomycota is classified as subkingdom Dikarya, reflecting the putative synapomorphy of dikaryotic hyphae. The most dramatic shifts in the classification relative to previous works concern the groups that have traditionally been included in the Chytridiomycota and Zygomycota. The Chytridiomycota is retained in a restricted sense, with Blastocladiomycota and Neocallimastigomycota representing segregate phyla of flagellated Fungi. Taxa traditionally placed in Zygomycota are distributed among Glomeromycota and several subphyla incertae sedis, including Mucoromycotina, Entomophthoromycotina, Kickxellomycotina, and Zoopagomycotiria. Microsporidia are included in the Fungi, but no further subdivision of the group is proposed. Several genera of 'basal' Fungi of uncertain position are not placed in any higher taxa, including Basidiobolus, Caulochytrium, Olpidium, and Rozella. (c) 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.

AB - A comprehensive phylogenetic classification of the kingdom Fungi is proposed, with reference to recent molecular phylogenetic analyses, and with input from diverse members of the fungal taxonomic community. The classification includes 195 taxa, down to the level of order, of which 16 are described or validated here: Dikarya subkingdom nov.; Chytridiomycota, Neocallimastigomycota phyla nov.; Monoblepharidomycetes, Neocallimastigomycetes class. nov.; Eurotiomycetidae, Lecarioromycetidae, Mycocaliciomycetidae subclass. nov.; Acarosporales, Corticiales, Baeomycetales, Candelariales, Gloeophyllales, Melanosporales, Trechisporales, Umbilicariales ords. nov. The clade containing Ascomycota and Basidiomycota is classified as subkingdom Dikarya, reflecting the putative synapomorphy of dikaryotic hyphae. The most dramatic shifts in the classification relative to previous works concern the groups that have traditionally been included in the Chytridiomycota and Zygomycota. The Chytridiomycota is retained in a restricted sense, with Blastocladiomycota and Neocallimastigomycota representing segregate phyla of flagellated Fungi. Taxa traditionally placed in Zygomycota are distributed among Glomeromycota and several subphyla incertae sedis, including Mucoromycotina, Entomophthoromycotina, Kickxellomycotina, and Zoopagomycotiria. Microsporidia are included in the Fungi, but no further subdivision of the group is proposed. Several genera of 'basal' Fungi of uncertain position are not placed in any higher taxa, including Basidiobolus, Caulochytrium, Olpidium, and Rozella. (c) 2007 The British Mycological Society. Published by Elsevier Ltd. All rights reserved.

KW - ribosomal dna-sequences

KW - lsu rdna sequences

KW - molecular phylogeny

KW - ord-nov

KW - mitochondrial sequences

KW - natural classification

KW - basidiomycetous yeasts

KW - bayesian-analysis

KW - large subunits

KW - nuclear rdna

U2 - 10.1016/j.mycres.2007.03.004

DO - 10.1016/j.mycres.2007.03.004

M3 - Article

VL - 111

SP - 509

EP - 547

JO - Mycological Research

JF - Mycological Research

SN - 0953-7562

IS - 5

ER -

A higher-level phylogenetic classification of the Fungi

Abstract

Keywords

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