A community resource for paired genomic and metabolomic data mining

Michelle A. Schorn; Stefan Verhoeven; Lars Ridder; Florian Huber; Deepa D. Acharya; Alexander A. Aksenov; Gajender Aleti; Jamshid Amiri Moghaddam; Allegra T. Aron; Saefuddin Aziz; Anelize Bauermeister; Katherine D. Bauman; Martin Baunach; Christine Beemelmanns; J.M. Beman; María Victoria Berlanga-Clavero; Alex A. Blacutt; Helge B. Bode; Anne Boullie; Asker Brejnrod; Tim S. Bugni; Alexandra Calteau; Liu Cao; Víctor J. Carrión; Raquel Castelo-Branco; Shaurya Chanana; Alexander B. Chase; Marc G. Chevrette; Leticia V. Costa-Lotufo; Jason M. Crawford; Cameron R. Currie; Bart Cuypers; Tam Dang; Tristan de Rond; Alyssa M. Demko; Elke Dittmann; Chao Du; Christopher Drozd; Jean-Claude Dujardin; Rachel J. Dutton; Anna Edlund; David P. Fewer; Neha Garg; Julia M. Gauglitz; Emily C. Gentry; Lena Gerwick; Evgenia Glukhov; Harald Gross; Muriel Gugger; Dulce G. Guillén Matus; Eric J.N. Helfrich; Benjamin-Florian Hempel; Jae-Seoun Hur; Marianna Iorio; Paul R. Jensen; Kyo Bin Kang; Leonard Kaysser; Neil L. Kelleher; Chung Sub Kim; Ki Hyun Kim; Irina Koester; Gabriele M. König; Tiago Leao; Seoung Rak Lee; Yi-Yuan Lee; Xuanji Li; Jessica C. Little; Katherine N. Maloney; Daniel Männle; Christian Martin H.; Andrew C. Mcavoy; Willam W. Metcalf; Hosein Mohimani; Carlos Molina-Santiago; Bradley S. Moore; Michael W. Mullowney; Mitchell Muskat; Louis-Félix Nothias; Ellis C. O’Neill; Elizabeth I. Parkinson; Daniel Petras; Jörn Piel; Emily C. Pierce; Karine Pires; Raphael Reher; Diego Romero; M.C. Roper; Michael Rust; Hamada Saad; Carmen Saenz; Laura M. Sanchez; Søren Johannes Sørensen; Margherita Sosio; Roderich D. Süssmuth; Douglas Sweeney; Kapil Tahlan; Regan J. Thomson; Nicholas J. Tobias; Amaro E. Trindade-Silva; Gilles P. van Wezel; Mingxun Wang; Kelly C. Weldon; Fan Zhang; Nadine Ziemert; Katherine R. Duncan; Max Crüsemann; Simon Rogers; Pieter C. Dorrestein; Marnix H. Medema; Justin J.J. van der Hooft

doi:10.1038/s41589-020-00724-z

A community resource for paired genomic and metabolomic data mining

Michelle A. Schorn, Stefan Verhoeven, Lars Ridder, Florian Huber, Deepa D. Acharya, Alexander A. Aksenov, Gajender Aleti, Jamshid Amiri Moghaddam, Allegra T. Aron, Saefuddin Aziz, Anelize Bauermeister, Katherine D. Bauman, Martin Baunach, Christine Beemelmanns, J.M. Beman, María Victoria Berlanga-Clavero, Alex A. Blacutt, Helge B. Bode, Anne Boullie, Asker BrejnrodTim S. Bugni, Alexandra Calteau, Liu Cao, Víctor J. Carrión, Raquel Castelo-Branco, Shaurya Chanana, Alexander B. Chase, Marc G. Chevrette, Leticia V. Costa-Lotufo, Jason M. Crawford, Cameron R. Currie, Bart Cuypers, Tam Dang, Tristan de Rond, Alyssa M. Demko, Elke Dittmann, Chao Du, Christopher Drozd, Jean-Claude Dujardin, Rachel J. Dutton, Anna Edlund, David P. Fewer, Neha Garg, Julia M. Gauglitz, Emily C. Gentry, Lena Gerwick, Evgenia Glukhov, Harald Gross, Muriel Gugger, Dulce G. Guillén Matus, Eric J.N. Helfrich, Benjamin-Florian Hempel, Jae-Seoun Hur, Marianna Iorio, Paul R. Jensen, Kyo Bin Kang, Leonard Kaysser, Neil L. Kelleher, Chung Sub Kim, Ki Hyun Kim, Irina Koester, Gabriele M. König, Tiago Leao, Seoung Rak Lee, Yi-Yuan Lee, Xuanji Li, Jessica C. Little, Katherine N. Maloney, Daniel Männle, Christian Martin H., Andrew C. Mcavoy, Willam W. Metcalf, Hosein Mohimani, Carlos Molina-Santiago, Bradley S. Moore, Michael W. Mullowney, Mitchell Muskat, Louis-Félix Nothias, Ellis C. O’Neill, Elizabeth I. Parkinson, Daniel Petras, Jörn Piel, Emily C. Pierce, Karine Pires, Raphael Reher, Diego Romero, M.C. Roper, Michael Rust, Hamada Saad, Carmen Saenz, Laura M. Sanchez, Søren Johannes Sørensen, Margherita Sosio, Roderich D. Süssmuth, Douglas Sweeney, Kapil Tahlan, Regan J. Thomson, Nicholas J. Tobias, Amaro E. Trindade-Silva, Gilles P. van Wezel, Mingxun Wang, Kelly C. Weldon, Fan Zhang, Nadine Ziemert, Katherine R. Duncan, Max Crüsemann, Simon Rogers, Pieter C. Dorrestein^*, Marnix H. Medema^*, Justin J.J. van der Hooft^*

^*Corresponding author for this work

Research output: Contribution to journal › Article › Academic › peer-review

84 Citations (Scopus)

Abstract

Genomics and metabolomics are widely used to explore specialized metabolite diversity. The Paired Omics Data Platform is a community initiative to systematically document links between metabolome and (meta)genome data, aiding identification of natural product biosynthetic origins and metabolite structures.

Original language	English
Pages (from-to)	363-368
Journal	Nature Chemical Biology
Volume	17
Issue number	4
Early online date	15 Feb 2021
DOIs	https://doi.org/10.1038/s41589-020-00724-z
Publication status	Published - 2021

Access to Document

10.1038/s41589-020-00724-zLicence: CC BY

https://edepot.wur.nl/543306Licence: CC BY

84 Citations
1 Software

Paired Omics Data Platform
Verhoeven, S., Schorn, M. A., Willighagen, E. & van der Hooft, J. J. J., 1 May 2019
Research output: Non-textual form › Software

Open Access

Paired omics Data Platform projects
Verhoeven, S. (Creator), Schorn, M. (Contributor), Medema, M. (Contributor), Dorrestein, P. C. (Creator) & van der Hooft, J. (Creator), 1 Apr 2020
DOI: 10.5281/zenodo.3736430
Dataset

1 Finished

COSMos: Chemistry of Sponge Microbiomes
1/05/20 → 30/04/22
Project: EU research project

Cite this

Schorn, M. A., Verhoeven, S., Ridder, L., Huber, F., Acharya, D. D., Aksenov, A. A., Aleti, G., Moghaddam, J. A., Aron, A. T., Aziz, S., Bauermeister, A., Bauman, K. D., Baunach, M., Beemelmanns, C., Beman, J. M., Berlanga-Clavero, M. V., Blacutt, A. A., Bode, H. B., Boullie, A., ... van der Hooft, J. J. J. (2021). A community resource for paired genomic and metabolomic data mining. Nature Chemical Biology, 17(4), 363-368. https://doi.org/10.1038/s41589-020-00724-z

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title = "A community resource for paired genomic and metabolomic data mining",

abstract = "Genomics and metabolomics are widely used to explore specialized metabolite diversity. The Paired Omics Data Platform is a community initiative to systematically document links between metabolome and (meta)genome data, aiding identification of natural product biosynthetic origins and metabolite structures.",

author = "Schorn, {Michelle A.} and Stefan Verhoeven and Lars Ridder and Florian Huber and Acharya, {Deepa D.} and Aksenov, {Alexander A.} and Gajender Aleti and Moghaddam, {Jamshid Amiri} and Aron, {Allegra T.} and Saefuddin Aziz and Anelize Bauermeister and Bauman, {Katherine D.} and Martin Baunach and Christine Beemelmanns and J.M. Beman and Berlanga-Clavero, {Mar{\'i}a Victoria} and Blacutt, {Alex A.} and Bode, {Helge B.} and Anne Boullie and Asker Brejnrod and Bugni, {Tim S.} and Alexandra Calteau and Liu Cao and Carri{\'o}n, {V{\'i}ctor J.} and Raquel Castelo-Branco and Shaurya Chanana and Chase, {Alexander B.} and Chevrette, {Marc G.} and Costa-Lotufo, {Leticia V.} and Crawford, {Jason M.} and Currie, {Cameron R.} and Bart Cuypers and Tam Dang and {de Rond}, Tristan and Demko, {Alyssa M.} and Elke Dittmann and Chao Du and Christopher Drozd and Jean-Claude Dujardin and Dutton, {Rachel J.} and Anna Edlund and Fewer, {David P.} and Neha Garg and Gauglitz, {Julia M.} and Gentry, {Emily C.} and Lena Gerwick and Evgenia Glukhov and Harald Gross and Muriel Gugger and {Guill{\'e}n Matus}, {Dulce G.} and Helfrich, {Eric J.N.} and Benjamin-Florian Hempel and Jae-Seoun Hur and Marianna Iorio and Jensen, {Paul R.} and Kang, {Kyo Bin} and Leonard Kaysser and Kelleher, {Neil L.} and Kim, {Chung Sub} and Kim, {Ki Hyun} and Irina Koester and K{\"o}nig, {Gabriele M.} and Tiago Leao and Lee, {Seoung Rak} and Yi-Yuan Lee and Xuanji Li and Little, {Jessica C.} and Maloney, {Katherine N.} and Daniel M{\"a}nnle and {Martin H.}, Christian and Mcavoy, {Andrew C.} and Metcalf, {Willam W.} and Hosein Mohimani and Carlos Molina-Santiago and Moore, {Bradley S.} and Mullowney, {Michael W.} and Mitchell Muskat and Louis-F{\'e}lix Nothias and O{\textquoteright}Neill, {Ellis C.} and Parkinson, {Elizabeth I.} and Daniel Petras and J{\"o}rn Piel and Pierce, {Emily C.} and Karine Pires and Raphael Reher and Diego Romero and M.C. Roper and Michael Rust and Hamada Saad and Carmen Saenz and Sanchez, {Laura M.} and S{\o}rensen, {S{\o}ren Johannes} and Margherita Sosio and S{\"u}ssmuth, {Roderich D.} and Douglas Sweeney and Kapil Tahlan and Thomson, {Regan J.} and Tobias, {Nicholas J.} and Trindade-Silva, {Amaro E.} and {van Wezel}, {Gilles P.} and Mingxun Wang and Weldon, {Kelly C.} and Fan Zhang and Nadine Ziemert and Duncan, {Katherine R.} and Max Cr{\"u}semann and Simon Rogers and Dorrestein, {Pieter C.} and Medema, {Marnix H.} and {van der Hooft}, {Justin J.J.}",

year = "2021",

doi = "10.1038/s41589-020-00724-z",

language = "English",

volume = "17",

pages = "363--368",

journal = "Nature Chemical Biology",

issn = "1552-4450",

publisher = "Nature",

number = "4",

}

Schorn, MA, Verhoeven, S, Ridder, L, Huber, F, Acharya, DD, Aksenov, AA, Aleti, G, Moghaddam, JA, Aron, AT, Aziz, S, Bauermeister, A, Bauman, KD, Baunach, M, Beemelmanns, C, Beman, JM, Berlanga-Clavero, MV, Blacutt, AA, Bode, HB, Boullie, A, Brejnrod, A, Bugni, TS, Calteau, A, Cao, L, Carrión, VJ, Castelo-Branco, R, Chanana, S, Chase, AB, Chevrette, MG, Costa-Lotufo, LV, Crawford, JM, Currie, CR, Cuypers, B, Dang, T, de Rond, T, Demko, AM, Dittmann, E, Du, C, Drozd, C, Dujardin, J-C, Dutton, RJ, Edlund, A, Fewer, DP, Garg, N, Gauglitz, JM, Gentry, EC, Gerwick, L, Glukhov, E, Gross, H, Gugger, M, Guillén Matus, DG, Helfrich, EJN, Hempel, B-F, Hur, J-S, Iorio, M, Jensen, PR, Kang, KB, Kaysser, L, Kelleher, NL, Kim, CS, Kim, KH, Koester, I, König, GM, Leao, T, Lee, SR, Lee, Y-Y, Li, X, Little, JC, Maloney, KN, Männle, D, Martin H., C, Mcavoy, AC, Metcalf, WW, Mohimani, H, Molina-Santiago, C, Moore, BS, Mullowney, MW, Muskat, M, Nothias, L-F, O’Neill, EC, Parkinson, EI, Petras, D, Piel, J, Pierce, EC, Pires, K, Reher, R, Romero, D, Roper, MC, Rust, M, Saad, H, Saenz, C, Sanchez, LM, Sørensen, SJ, Sosio, M, Süssmuth, RD, Sweeney, D, Tahlan, K, Thomson, RJ, Tobias, NJ, Trindade-Silva, AE, van Wezel, GP, Wang, M, Weldon, KC, Zhang, F, Ziemert, N, Duncan, KR, Crüsemann, M, Rogers, S, Dorrestein, PC, Medema, MH & van der Hooft, JJJ 2021, 'A community resource for paired genomic and metabolomic data mining', Nature Chemical Biology, vol. 17, no. 4, pp. 363-368. https://doi.org/10.1038/s41589-020-00724-z

TY - JOUR

T1 - A community resource for paired genomic and metabolomic data mining

AU - Schorn, Michelle A.

AU - Verhoeven, Stefan

AU - Ridder, Lars

AU - Huber, Florian

AU - Acharya, Deepa D.

AU - Aksenov, Alexander A.

AU - Aleti, Gajender

AU - Moghaddam, Jamshid Amiri

AU - Aron, Allegra T.

AU - Aziz, Saefuddin

AU - Bauermeister, Anelize

AU - Bauman, Katherine D.

AU - Baunach, Martin

AU - Beemelmanns, Christine

AU - Beman, J.M.

AU - Berlanga-Clavero, María Victoria

AU - Blacutt, Alex A.

AU - Bode, Helge B.

AU - Boullie, Anne

AU - Brejnrod, Asker

AU - Bugni, Tim S.

AU - Calteau, Alexandra

AU - Cao, Liu

AU - Carrión, Víctor J.

AU - Castelo-Branco, Raquel

AU - Chanana, Shaurya

AU - Chase, Alexander B.

AU - Chevrette, Marc G.

AU - Costa-Lotufo, Leticia V.

AU - Crawford, Jason M.

AU - Currie, Cameron R.

AU - Cuypers, Bart

AU - Dang, Tam

AU - de Rond, Tristan

AU - Demko, Alyssa M.

AU - Dittmann, Elke

AU - Du, Chao

AU - Drozd, Christopher

AU - Dujardin, Jean-Claude

AU - Dutton, Rachel J.

AU - Edlund, Anna

AU - Fewer, David P.

AU - Garg, Neha

AU - Gauglitz, Julia M.

AU - Gentry, Emily C.

AU - Gerwick, Lena

AU - Glukhov, Evgenia

AU - Gross, Harald

AU - Gugger, Muriel

AU - Guillén Matus, Dulce G.

AU - Helfrich, Eric J.N.

AU - Hempel, Benjamin-Florian

AU - Hur, Jae-Seoun

AU - Iorio, Marianna

AU - Jensen, Paul R.

AU - Kang, Kyo Bin

AU - Kaysser, Leonard

AU - Kelleher, Neil L.

AU - Kim, Chung Sub

AU - Kim, Ki Hyun

AU - Koester, Irina

AU - König, Gabriele M.

AU - Leao, Tiago

AU - Lee, Seoung Rak

AU - Lee, Yi-Yuan

AU - Li, Xuanji

AU - Little, Jessica C.

AU - Maloney, Katherine N.

AU - Männle, Daniel

AU - Martin H., Christian

AU - Mcavoy, Andrew C.

AU - Metcalf, Willam W.

AU - Mohimani, Hosein

AU - Molina-Santiago, Carlos

AU - Moore, Bradley S.

AU - Mullowney, Michael W.

AU - Muskat, Mitchell

AU - Nothias, Louis-Félix

AU - O’Neill, Ellis C.

AU - Parkinson, Elizabeth I.

AU - Petras, Daniel

AU - Piel, Jörn

AU - Pierce, Emily C.

AU - Pires, Karine

AU - Reher, Raphael

AU - Romero, Diego

AU - Roper, M.C.

AU - Rust, Michael

AU - Saad, Hamada

AU - Saenz, Carmen

AU - Sanchez, Laura M.

AU - Sørensen, Søren Johannes

AU - Sosio, Margherita

AU - Süssmuth, Roderich D.

AU - Sweeney, Douglas

AU - Tahlan, Kapil

AU - Thomson, Regan J.

AU - Tobias, Nicholas J.

AU - Trindade-Silva, Amaro E.

AU - van Wezel, Gilles P.

AU - Wang, Mingxun

AU - Weldon, Kelly C.

AU - Zhang, Fan

AU - Ziemert, Nadine

AU - Duncan, Katherine R.

AU - Crüsemann, Max

AU - Rogers, Simon

AU - Dorrestein, Pieter C.

AU - Medema, Marnix H.

AU - van der Hooft, Justin J.J.

PY - 2021

Y1 - 2021

N2 - Genomics and metabolomics are widely used to explore specialized metabolite diversity. The Paired Omics Data Platform is a community initiative to systematically document links between metabolome and (meta)genome data, aiding identification of natural product biosynthetic origins and metabolite structures.

AB - Genomics and metabolomics are widely used to explore specialized metabolite diversity. The Paired Omics Data Platform is a community initiative to systematically document links between metabolome and (meta)genome data, aiding identification of natural product biosynthetic origins and metabolite structures.

U2 - 10.1038/s41589-020-00724-z

DO - 10.1038/s41589-020-00724-z

M3 - Article

SN - 1552-4450

VL - 17

SP - 363

EP - 368

JO - Nature Chemical Biology

JF - Nature Chemical Biology

IS - 4

ER -

A community resource for paired genomic and metabolomic data mining

Abstract

Access to Document

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Research output

Paired Omics Data Platform

Datasets

Paired omics Data Platform projects

Projects

COSMos: Chemistry of Sponge Microbiomes

Cite this