A class-wide phylogenetic assessment of Dothideomycetes

C.L. Schoch; P.W. Crous; J.Z. Groenewald; E.W.A. Boehm; T.I. Burgess; J. de Gruyter; G.S. de Hoog; L.J. Dixon; M. Grube; C. Gueidan; Y. Harada; S. Hatakeyama; K. Hirayama; T. Hosoya; S.M. Huhndorf; K.D. Hyde; E.B.G. Jones; J. Kohlmeyer; Å. Kruys; Y.M. Li; R. Lücking; H.T. Lumbsch; L. Marvanová; J.S. Mbatchou; A.H. McVay; A.N. Miller; G.K. Mugambi; L. Muggia; M.P. Nelsen; P. Nelson; C.A. Owensby; A.J.L. Phillips; S. Phongpaichit; S.B. Pointing; V. Pujade-Renaud; H.A. Raja; E. Rivas Plata; B. Robbertse; C. Ruibal; J. Sakayaroj; T. Sano; L. Selbmann; C.A. Shearer; T. Shirouzu; B. Slippers; S. Suetrong; K. Tanaka; B. Volkmann-Kohlmeyer; M.J. Wingfield; A.R. Wood; J.H.C. Woudenberg; H. Yonezawa; Y. Zhang; J.W. Spatafora

doi:10.3114/sim.2009.64.01

A class-wide phylogenetic assessment of Dothideomycetes

C.L. Schoch, P.W. Crous, J.Z. Groenewald, E.W.A. Boehm, T.I. Burgess, J. de Gruyter, G.S. de Hoog, L.J. Dixon, M. Grube, C. Gueidan, Y. Harada, S. Hatakeyama, K. Hirayama, T. Hosoya, S.M. Huhndorf, K.D. Hyde, E.B.G. Jones, J. Kohlmeyer, Å. Kruys, Y.M. LiR. Lücking, H.T. Lumbsch, L. Marvanová, J.S. Mbatchou, A.H. McVay, A.N. Miller, G.K. Mugambi, L. Muggia, M.P. Nelsen, P. Nelson, C.A. Owensby, A.J.L. Phillips, S. Phongpaichit, S.B. Pointing, V. Pujade-Renaud, H.A. Raja, E. Rivas Plata, B. Robbertse, C. Ruibal, J. Sakayaroj, T. Sano, L. Selbmann, C.A. Shearer, T. Shirouzu, B. Slippers, S. Suetrong, K. Tanaka, B. Volkmann-Kohlmeyer, M.J. Wingfield, A.R. Wood, J.H.C. Woudenberg, H. Yonezawa, Y. Zhang, J.W. Spatafora

Laboratory of Phytopathology

Research output: Contribution to journal › Article › Academic › peer-review

502 Citations (Scopus)

Abstract

We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) in Dothideomycetes. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. Subclass Pleosporomycetidae is expanded to include the aquatic order Jahnulales. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon

Original language	English
Pages (from-to)	1-15
Journal	Studies in Mycology
Volume	64
Issue number	1
DOIs	https://doi.org/10.3114/sim.2009.64.01
Publication status	Published - 2009

Keywords

ribosomal dna-sequences
multigene phylogenies
molecular phylogeny
maximum-likelihood
multiple alignment
marine ascomycota
rdna sequences
fungi
evolution
classification

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

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10.3114/sim.2009.64.01

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Schoch, C. L., Crous, P. W., Groenewald, J. Z., Boehm, E. W. A., Burgess, T. I., de Gruyter, J., de Hoog, G. S., Dixon, L. J., Grube, M., Gueidan, C., Harada, Y., Hatakeyama, S., Hirayama, K., Hosoya, T., Huhndorf, S. M., Hyde, K. D., Jones, E. B. G., Kohlmeyer, J., Kruys, Å., ... Spatafora, J. W. (2009). A class-wide phylogenetic assessment of Dothideomycetes. Studies in Mycology, 64(1), 1-15. https://doi.org/10.3114/sim.2009.64.01

@article{dcb96d773ce14ee8ac6ef56263df4567,

title = "A class-wide phylogenetic assessment of Dothideomycetes",

abstract = "We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) in Dothideomycetes. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. Subclass Pleosporomycetidae is expanded to include the aquatic order Jahnulales. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon",

keywords = "ribosomal dna-sequences, multigene phylogenies, molecular phylogeny, maximum-likelihood, multiple alignment, marine ascomycota, rdna sequences, fungi, evolution, classification",

author = "C.L. Schoch and P.W. Crous and J.Z. Groenewald and E.W.A. Boehm and T.I. Burgess and {de Gruyter}, J. and {de Hoog}, G.S. and L.J. Dixon and M. Grube and C. Gueidan and Y. Harada and S. Hatakeyama and K. Hirayama and T. Hosoya and S.M. Huhndorf and K.D. Hyde and E.B.G. Jones and J. Kohlmeyer and {\AA}. Kruys and Y.M. Li and R. L{\"u}cking and H.T. Lumbsch and L. Marvanov{\'a} and J.S. Mbatchou and A.H. McVay and A.N. Miller and G.K. Mugambi and L. Muggia and M.P. Nelsen and P. Nelson and C.A. Owensby and A.J.L. Phillips and S. Phongpaichit and S.B. Pointing and V. Pujade-Renaud and H.A. Raja and {Rivas Plata}, E. and B. Robbertse and C. Ruibal and J. Sakayaroj and T. Sano and L. Selbmann and C.A. Shearer and T. Shirouzu and B. Slippers and S. Suetrong and K. Tanaka and B. Volkmann-Kohlmeyer and M.J. Wingfield and A.R. Wood and J.H.C. Woudenberg and H. Yonezawa and Y. Zhang and J.W. Spatafora",

year = "2009",

doi = "10.3114/sim.2009.64.01",

language = "English",

volume = "64",

pages = "1--15",

journal = "Studies in Mycology",

issn = "0166-0616",

publisher = "Elsevier",

number = "1",

}

Schoch, CL, Crous, PW, Groenewald, JZ, Boehm, EWA, Burgess, TI, de Gruyter, J, de Hoog, GS, Dixon, LJ, Grube, M, Gueidan, C, Harada, Y, Hatakeyama, S, Hirayama, K, Hosoya, T, Huhndorf, SM, Hyde, KD, Jones, EBG, Kohlmeyer, J, Kruys, Å, Li, YM, Lücking, R, Lumbsch, HT, Marvanová, L, Mbatchou, JS, McVay, AH, Miller, AN, Mugambi, GK, Muggia, L, Nelsen, MP, Nelson, P, Owensby, CA, Phillips, AJL, Phongpaichit, S, Pointing, SB, Pujade-Renaud, V, Raja, HA, Rivas Plata, E, Robbertse, B, Ruibal, C, Sakayaroj, J, Sano, T, Selbmann, L, Shearer, CA, Shirouzu, T, Slippers, B, Suetrong, S, Tanaka, K, Volkmann-Kohlmeyer, B, Wingfield, MJ, Wood, AR, Woudenberg, JHC, Yonezawa, H, Zhang, Y & Spatafora, JW 2009, 'A class-wide phylogenetic assessment of Dothideomycetes', Studies in Mycology, vol. 64, no. 1, pp. 1-15. https://doi.org/10.3114/sim.2009.64.01

TY - JOUR

T1 - A class-wide phylogenetic assessment of Dothideomycetes

AU - Schoch, C.L.

AU - Crous, P.W.

AU - Groenewald, J.Z.

AU - Boehm, E.W.A.

AU - Burgess, T.I.

AU - de Gruyter, J.

AU - de Hoog, G.S.

AU - Dixon, L.J.

AU - Grube, M.

AU - Gueidan, C.

AU - Harada, Y.

AU - Hatakeyama, S.

AU - Hirayama, K.

AU - Hosoya, T.

AU - Huhndorf, S.M.

AU - Hyde, K.D.

AU - Jones, E.B.G.

AU - Kohlmeyer, J.

AU - Kruys, Å.

AU - Li, Y.M.

AU - Lücking, R.

AU - Lumbsch, H.T.

AU - Marvanová, L.

AU - Mbatchou, J.S.

AU - McVay, A.H.

AU - Miller, A.N.

AU - Mugambi, G.K.

AU - Muggia, L.

AU - Nelsen, M.P.

AU - Nelson, P.

AU - Owensby, C.A.

AU - Phillips, A.J.L.

AU - Phongpaichit, S.

AU - Pointing, S.B.

AU - Pujade-Renaud, V.

AU - Raja, H.A.

AU - Rivas Plata, E.

AU - Robbertse, B.

AU - Ruibal, C.

AU - Sakayaroj, J.

AU - Sano, T.

AU - Selbmann, L.

AU - Shearer, C.A.

AU - Shirouzu, T.

AU - Slippers, B.

AU - Suetrong, S.

AU - Tanaka, K.

AU - Volkmann-Kohlmeyer, B.

AU - Wingfield, M.J.

AU - Wood, A.R.

AU - Woudenberg, J.H.C.

AU - Yonezawa, H.

AU - Zhang, Y.

AU - Spatafora, J.W.

PY - 2009

Y1 - 2009

N2 - We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) in Dothideomycetes. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. Subclass Pleosporomycetidae is expanded to include the aquatic order Jahnulales. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon

AB - We present a comprehensive phylogeny derived from 5 genes, nucSSU, nucLSU rDNA, TEF1, RPB1 and RPB2, for 356 isolates and 41 families (six newly described in this volume) in Dothideomycetes. All currently accepted orders in the class are represented for the first time in addition to numerous previously unplaced lineages. Subclass Pleosporomycetidae is expanded to include the aquatic order Jahnulales. An ancestral reconstruction of basic nutritional modes supports numerous transitions from saprobic life histories to plant associated and lichenised modes and a transition from terrestrial to aquatic habitats are confirmed. Finally, a genomic comparison of 6 dothideomycete genomes with other fungi finds a high level of unique protein associated with the class, supporting its delineation as a separate taxon

KW - ribosomal dna-sequences

KW - multigene phylogenies

KW - molecular phylogeny

KW - maximum-likelihood

KW - multiple alignment

KW - marine ascomycota

KW - rdna sequences

KW - fungi

KW - evolution

KW - classification

U2 - 10.3114/sim.2009.64.01

DO - 10.3114/sim.2009.64.01

M3 - Article

VL - 64

SP - 1

EP - 15

JO - Studies in Mycology

JF - Studies in Mycology

SN - 0166-0616

IS - 1

ER -

A class-wide phylogenetic assessment of Dothideomycetes

Abstract

Keywords

UN SDGs

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