Research output per year
Research output per year
- 1 - 50 out of 61 results
Search results
-
2022
Acetate Degradation at Low pH by the Moderately Acidophilic Sulfate Reducer Acididesulfobacillus acetoxydans gen. nov. sp. nov.
Sánchez-Andrea, I., van der Graaf, C. M., Hornung, B., Bale, N. J., Jarzembowska, M., Sousa, D. Z., Rijpstra, W. I. C., Sinninghe Damsté, J. S. & Stams, A. J. M., 4 Mar 2022, In: Frontiers in Microbiology. 13, 816605.Research output: Contribution to journal › Article › Academic › peer-review
Open Access16 Citations (Scopus) -
Principles, Advances, and Perspectives of Anaerobic Digestion of Lipids
Holohan, B. C., Duarte, M. S., Szabo-Corbacho, M. A., Cavaleiro, A. J., Salvador, A. F., Pereira, M. A., Ziels, R. M., Frijters, C. T. M. J., Pacheco-Ruiz, S., Carballa, M., Sousa, D. Z., Stams, A. J. M., O'Flaherty, V., Van Lier, J. B. & Alves, M. M., 19 Apr 2022, In: Environmental Science and Technology. 56, 8, p. 4749-4775Research output: Contribution to journal › Article › Academic › peer-review
Open Access59 Citations (Scopus) -
2021
Comparative proteomics of Geobacter sulfurreducens PCAT in response to acetate, formate and/or hydrogen as electron donor
Mollaei, M., Timmers, P. H. A., Suarez-Diez, M., Boeren, S., van Gelder, A. H., Stams, A. J. M. & Plugge, C. M., Jan 2021, In: Environmental Microbiology. 23, 1, p. 299-315Research output: Contribution to journal › Article › Academic › peer-review
Open Access30 Citations (Scopus) -
Proteomic Analysis of a Syntrophic Coculture of Syntrophobacter fumaroxidans MPOBT and Geobacter sulfurreducens PCAT
Mollaei, M., Suarez-Diez, M., Sedano-Nunez, V. T., Boeren, S., Stams, A. J. M. & Plugge, C. M., 30 Nov 2021, In: Frontiers in Microbiology. 12, 708911.Research output: Contribution to journal › Article › Academic › peer-review
Open Access5 Citations (Scopus) -
2020
Biodiversity and ecology of microorganisms in high pressure membrane filtration systems
de Vries, H. J., Stams, A. J. M. & Plugge, C. M., 1 Apr 2020, In: Water Research. 172, 115511.Research output: Contribution to journal › Article › Academic › peer-review
Open Access36 Citations (Scopus) -
Butyrate conversion by sulfate-reducing and methanogenic communities from anoxic sediments of Aarhus Bay, Denmark
Ozuolmez, D., Moore, E. K., Hopmans, E. C., Damsté, J. S., Stams, A. J. M. & Plugge, C. M., Apr 2020, In: Microorganisms. 8, 4, 606.Research output: Contribution to journal › Article › Academic › peer-review
Open Access12 Citations (Scopus) -
Genome-guided analysis allows the identification of novel physiological traits in Trichococcus species
Strepis, N., Naranjo, H. D., Meier-Kolthoff, J., Göker, M., Shapiro, N., Kyrpides, N., Klenk, H. P., Schaap, P. J., Stams, A. J. M. & Sousa, D. Z., 8 Jan 2020, In: BMC Genomics. 21, 1, 24.Research output: Contribution to journal › Article › Academic › peer-review
Open Access33 Citations (Scopus) -
Immobilization of sulfate and thiosulfate-reducing biomass on sand under haloalkaline conditions
Sousa, J. A. B., Bolgár, A., Christel, S., Dopson, M., Bijmans, M. F. M., Stams, A. J. M. & Plugge, C. M., 25 Nov 2020, In: Science of the Total Environment. 745, 141017.Research output: Contribution to journal › Article › Academic › peer-review
Open Access3 Citations (Scopus) -
Organohalide-respiring Desulfoluna species isolated from marine environments
Peng, P., Goris, T., Lu, Y., Nijsse, B., Burrichter, A., Schleheck, D., Koehorst, J. J., Liu, J., Sipkema, D., Sinninghe Damste, J. S., Stams, A. J. M., Häggblom, M. M., Smidt, H. & Atashgahi, S., Mar 2020, In: ISME Journal. 14, p. 815–827Research output: Contribution to journal › Article › Academic › peer-review
Open Access29 Citations (Scopus) -
Propionate converting anaerobic microbial communities enriched from distinct biogeochemical zones of Aarhus Bay, Denmark under sulfidogenic and methanogenic conditions
Ozuolmez, D., Stams, A. J. M. & Plugge, C. M., 11 Mar 2020, In: Microorganisms. 8, 3, 394.Research output: Contribution to journal › Article › Academic › peer-review
Open Access13 Citations (Scopus) -
Syngas as electron donor for sulfate and thiosulfate reducing haloalkaliphilic microorganisms in a gas-lift bioreactor
Plugge, C. M., Sousa, J. A. B., Christel, S., Dopson, M., Bijmans, M. F. M., Stams, A. J. M. & Diender, M., 22 Sept 2020, In: Microorganisms. 8, 9, 18 p., 1451.Research output: Contribution to journal › Article › Academic › peer-review
Open Access2 Citations (Scopus) -
2019
Development of a bioelectrochemical system as a tool to enrich H2-producing syntrophic bacteria
Guzman, J. J. L., Sousa, D. Z. & Angenent, L. T., 5 Feb 2019, In: Frontiers in Microbiology. 10, FEB, 110.Research output: Contribution to journal › Article › Academic › peer-review
Open Access9 Citations (Scopus) -
Elucidating syntrophic butyrate-degrading populations in anaerobic digesters using stable-isotope-informed genome-resolved metagenomics
Ziels, R. M., Nobu, M. K. & Sousa, D. Z., 6 Aug 2019, In: mSystems. 4, 4, e00159-19.Research output: Contribution to journal › Article › Academic › peer-review
Open Access28 Citations (Scopus) -
Inhibition Studies with 2-Bromoethanesulfonate Reveal a Novel Syntrophic Relationship in Anaerobic Oleate Degradation
Salvador, A. F., Cavaleiro, A. J., Paulo, A. M. S., Silva, S. A., Guedes, A. P., Pereira, M. A., Stams, A. J. M., Sousa, D. Z. & Alves, M. M., 9 Jan 2019, In: Applied and Environmental Microbiology. 85, 2, e01733-18.Research output: Contribution to journal › Article › Academic › peer-review
Open Access32 Citations (Scopus) -
Insight into the sulfur metabolism of Desulfurella amilsii by differential proteomics
Florentino, A. P., Pereira, I. A. C., Boeren, S., van den Born, M., Stams, A. J. M. & Sánchez-Andrea, I., Jan 2019, In: Environmental Microbiology. 21, 1, p. 209-225Research output: Contribution to journal › Article › Academic › peer-review
Open Access55 Citations (Scopus) -
Isolation and characterization of Sphingomonadaceae from fouled membranes
de Vries, H. J., Beyer, F., Jarzembowska, M., Lipińska, J., van den Brink, P., Zwijnenburg, A., Timmers, P. H. A., Stams, A. J. M. & Plugge, C. M., 29 Jan 2019, In: npj Biofilms and Microbiomes. 5, 1, 6.Research output: Contribution to journal › Article › Academic › peer-review
Open Access51 Citations (Scopus) -
Trichococcus shcherbakoviae sp. nov., isolated from a laboratory-scale anaerobic EGSB bioreactor operated at low temperature
Parshina, S. N., Strepis, N., Aalvink, S., Nozhevnikova, A. N., Stams, A. J. M. & Sousa, D. Z., 1 Feb 2019, In: International Journal of Systematic and Evolutionary Microbiology. 69, 2, p. 529-534 6 p.Research output: Contribution to journal › Article › Academic › peer-review
27 Citations (Scopus) -
2018
A benzene-degrading nitrate-reducing microbial consortium displays aerobic and anaerobic benzene degradation pathways
Atashgahi, S., Hornung, B., van der Waals, M. J., Da Rocha, U. N., Hugenholtz, F., Nijsse, B., Molenaar, D., van Spanning, R., Stams, A. J. M., Gerritse, J. & Smidt, H., 1 Dec 2018, In: Scientific Reports. 8, 1, 4490.Research output: Contribution to journal › Article › Academic › peer-review
Open Access73 Citations (Scopus) -
Bacterial glycerol oxidation coupled to sulfate reduction at neutral and acidic pH
Santos, S. C., Liebensteiner, M. G., van Gelder, A. H., Dimitrov, M. R., Almeida, P. F., Quintella, C. M., Stams, A. J. M. & Sánchez-Andrea, I., 1 Jan 2018, In: Journal of General and Applied Microbiology. 64, 1, p. 1-8 8 p.Research output: Contribution to journal › Article › Academic › peer-review
Open Access11 Citations (Scopus) -
Comparative proteome analysis of propionate degradation by Syntrophobacter fumaroxidans in pure culture and in coculture with methanogens
Sedano-Núñez, V. T., Boeren, S., Stams, A. J. M. & Plugge, C. M., 1 May 2018, In: Environmental Microbiology. 20, 5, p. 1842-1856Research output: Contribution to journal › Article › Academic › peer-review
Open Access50 Citations (Scopus) -
Enhancement of methane production from 1-hexadecene by additional electron donors
Paulo, A. M. S., Salvador, A. F., Alves, J. I., Castro, R., Langenhoff, A. A. M., Stams, A. J. M. & Cavaleiro, A. J., Jul 2018, In: Microbial Biotechnology. 11, 4, p. 657-666Research output: Contribution to journal › Article › Academic › peer-review
Open Access11 Citations (Scopus) -
Enrichment of syngas-converting communities from a multi-orifice baffled bioreactor
Arantes, A. L., Alves, J. I., Stams, A. J. M., Alves, M. M. & Sousa, D. Z., Jul 2018, In: Microbial Biotechnology. 11, 4, p. 639-646Research output: Contribution to journal › Article › Academic › peer-review
Open Access18 Citations (Scopus) -
High Rate Biomethanation of Carbon Monoxide-Rich Gases via a Thermophilic Synthetic Coculture
Diender, M., Uhl, P. S., Bitter, J. H., Stams, A. J. M. & Sousa, D. Z., Feb 2018, In: ACS sustainable chemistry & engineering. 6, 2, p. 2169-2176Research output: Contribution to journal › Article › Academic › peer-review
Open Access34 Citations (Scopus) -
Insight into the Role of Facultative Bacteria Stimulated by Microaeration in Continuous Bioreactors Converting LCFA to Methane
Duarte, M. S., Silva, S. A., Salvador, A. F., Cavaleiro, A. J., Stams, A. J. M., Alves, M. M. & Pereira, M. A., 15 May 2018, In: Environmental Science and Technology. 52, 11, p. 6497-6507Research output: Contribution to journal › Article › Academic › peer-review
48 Citations (Scopus) -
Novel energy conservation strategies and behaviour of Pelotomaculum schinkii driving syntrophic propionate catabolism
Hidalgo-Ahumada, C. A. P., Nobu, M. K., Narihiro, T., Tamaki, H., Liu, W. T., Kamagata, Y., Stams, A. J. M., Imachi, H. & Sousa, D. Z., Dec 2018, In: Environmental Microbiology. 20, 12, p. 4503-4511Research output: Contribution to journal › Article › Academic › peer-review
35 Citations (Scopus) -
Organic acid production from potato starch waste fermentation by rumen microbial communities from Dutch and Thai dairy cows
Palakawong Na Ayudthaya, S., Van De Weijer, A. H. P., Van Gelder, A. H., Stams, A. J. M., De Vos, W. M. & Plugge, C. M., 25 Jan 2018, In: Biotechnology for Biofuels. 11, 1, 13.Research output: Contribution to journal › Article › Academic › peer-review
Open Access28 Citations (Scopus) -
The deep-subsurface sulfate reducer Desulfotomaculum kuznetsovii employs two methanol-degrading pathways
Sousa, D. Z., Visser, M., Van Gelder, A. H., Boeren, S., Pieterse, M. M., Pinkse, M. W. H., Verhaert, P. D. E. M., Vogt, C., Franke, S., Kümmel, S. & Stams, A. J. M., 16 Jan 2018, In: Nature Communications. 9, 1, 239.Research output: Contribution to journal › Article › Academic › peer-review
Open Access39 Citations (Scopus) -
Towards sustainable feedstocks: A guide to electron donors for microbial carbon fixation
Claassens, N. J., Sánchez-Andrea, I., Sousa, D. Z. & Bar-Even, A., 1 Apr 2018, In: Current Opinion in Biotechnology. 50, p. 195-205Research output: Contribution to journal › Article › Academic › peer-review
Open Access88 Citations (Scopus) -
2017
Carbon nanotubes accelerate methane production in pure cultures of methanogens and in a syntrophic coculture
Salvador, A. F., Martins, G., Melle-Franco, M., Serpa, R., Stams, A. J. M., Cavaleiro, A. J., Pereira, M. A. & Alves, M. M., 2017, In: Environmental Microbiology. 19, 7, p. 2727-2739Research output: Contribution to journal › Article › Academic › peer-review
Open Access129 Citations (Scopus) -
Evaluation and optimization of PCR primers for selective and quantitative detection of marine ANME subclusters involved in sulfate-dependent anaerobic methane oxidation
Timmers, P. H. A., Widjaja, A., Plugge, C. M. & Stams, A. J. M., 2017, In: Applied Microbiology and Biotechnology. 101, 14, p. 5847-5859Research output: Contribution to journal › Article › Academic › peer-review
Open Access11 Citations (Scopus) -
Exploiting the potential of gas fermentation
Redl, S., Diender, M., Jensen, T. Ø., Machado de Sousa, D. & Nielsen, A. T., 2017, In: Industrial Crops and Products. 106, p. 21-30Research output: Contribution to journal › Article › Academic › peer-review
35 Citations (Scopus) -
Reverse Methanogenesis and Respiration in Methanotrophic Archaea
Timmers, P. H. A., Welte, C. U., Koehorst, J. J., Plugge, C. M., Jetten, M. S. M. & Stams, A. J. M., 2017, In: Archaea : an international microbiological journal. 2017, 1654237.Research output: Contribution to journal › Article › Academic › peer-review
Open Access266 Citations (Scopus) -
Sodium lauryl ether sulfate (SLES) degradation by nitrate-reducing bacteria
da Silva Paulo, A., Aydin, R., Dimitrov, M. R., Vreeling, H., Cavaleiro, A. J., García-Encina, P. A., Stams, F. & Plugge, C. M., 2017, In: Applied Microbiology and Biotechnology. 101, 12, p. 5163-5173Research output: Contribution to journal › Article › Academic › peer-review
Open Access29 Citations (Scopus) -
Thiosulfate Conversion to Sulfide by a Haloalkaliphilic Microbial Community in a Bioreactor Fed with H2 Gas
Bastos Sousa, J., Bijmans, M. F. M., Stams, A. J. M. & Plugge, C. M., 2017, In: Environmental Science and Technology. 51, 2, p. 914-923Research output: Contribution to journal › Article › Academic › peer-review
9 Citations (Scopus) -
2016
Actinomyces succiniciruminis sp. nov. and Actinomyces glycerinitolerans sp. nov., two novel organic acid-producing bacteria isolated from rumen
Palakawong Na Ayudthaya, S., Pristaš, P., Hrehová, L., Javorský, P., Stams, A. J. M. & Plugge, C. M., 2016, In: Systematic and Applied Microbiology. 39, 7, p. 445-452Research output: Contribution to journal › Article › Academic › peer-review
Open Access15 Citations (Scopus) -
Anaerobic oxidation of methane associated with sulfate reduction in a natural freshwater gas source
Timmers, P. H. A., Suarez Zuluaga, D. A., van Rossem, R., Diender, M., Stams, A. J. M. & Plugge, C. M., 2016, In: ISME Journal. 10, p. 1400-1412Research output: Contribution to journal › Article › Academic › peer-review
Open Access101 Citations (Scopus) -
A narrow pH range supports butanol, hexanol, and octanol production from syngas in a continuous co-culture of Clostridium ljungdahlii and Clostridium kluyveri with in-line product extraction
Richter, H., Molitor, B., Diender, M., Machado de Sousa, D. & Angenent, L. T., 2016, In: Frontiers in Microbiology. 7, 1773.Research output: Contribution to journal › Article › Academic › peer-review
Open Access157 Citations (Scopus) -
Comparative analysis of carbon monoxide tolerance among Thermoanaerobacter species
Alves, J. I., Alves, M. M., Plugge, C. M., Stams, A. J. M. & Sousa, D. Z., 2016, In: Frontiers in Microbiology. 7, 9 p., 1330.Research output: Contribution to journal › Article › Academic › peer-review
Open Access6 Citations (Scopus) -
Conversion of Cn-unsaturated into Cn-2-saturated LCFA can occur uncoupled from methanogenesis in anaerobic bioreactors
Cavaleiro, A. J., Pereira, M. A., Guedes, A. P., Stams, A. J. M., Alves, M. M. & Machado de Sousa, D. Z., 2016, In: Environmental Science and Technology. 50, 6, p. 3082-3090Research output: Contribution to journal › Article › Academic › peer-review
56 Citations (Scopus) -
Genome and proteome analysis of Pseudomonas chloritidismutans AW-1T that grows on n-decane with chlorate or oxygen as electron acceptor
Mehboob, F., Oosterkamp, M. J., Koehorst, J. J., Farrakh, S., Veuskens, T., Plugge, C. M., Boeren, S., de Vos, W. M., Schraa, G., Stams, A. J. M. & Schaap, P. J., 2016, In: Environmental Microbiology. 18, 10, p. 3247-3257Research output: Contribution to journal › Article › Academic › peer-review
20 Citations (Scopus) -
Production of medium-chain fatty acids and higher alcohols by a synthetic co-culture grown on carbon monoxide or syngas
Diender, M., Stams, A. J. M. & Machado de Sousa, D. Z., 2016, In: Biotechnology for Biofuels. 9, 82.Research output: Contribution to journal › Article › Academic › peer-review
Open Access207 Citations (Scopus) -
Proteomic analysis of the hydrogen and carbon monoxide metabolism of methanothermobacter marburgensis
Diender, M., Afonso Goncalves Pereira, R., Wessels, H. J. C. T., Stams, F. & Machado de Sousa, D., 2016, In: Frontiers in Microbiology. 7, 1049.Research output: Contribution to journal › Article › Academic › peer-review
Open Access34 Citations (Scopus) -
Toxicity of long chain fatty acids towards acetate conversion by Methanosaeta concilii and Methanosarcina mazei
Silva, S. A., Salvador, A. F., Cavaleiro, A. J., Pereira, M. A., Stams, F., Alves, M. M. & Sousa, D. Z., 2016, In: Microbial Biotechnology. 9, 4, p. 514-518Research output: Contribution to journal › Article › Academic › peer-review
Open Access54 Citations (Scopus) -
Unravelling the one-carbon metabolism of the acetogen Sporomusa strain An4 by genome and proteome analysis
Visser, M., Pieterse, M. M., Pinkse, M. W. H., Nijsse, B., Verhaert, P. D. E. M., de Vos, W. M., Schaap, P. J. & Stams, A. J. M., 2016, In: Environmental Microbiology. 18, 9, p. 2843-2855Research output: Contribution to journal › Article › Academic › peer-review
30 Citations (Scopus) -
2015
Desulfosporosinus acididurans sp. nov.: an acidophilic sulfate-reducing bacterium isolated from acidic sediments
Sanchez Andrea, I., Stams, A. J. M., Hedrich, S., Nancucheo, I. & Johnson, D. B., 2015, In: Extremophiles. 19, 1, p. 39-47Research output: Contribution to journal › Article › Academic › peer-review
135 Citations (Scopus) -
Meta-omics approaches to understand and improve wastewater treatment systems
Rodríguez, E., García-Encina, P. A., Stams, A. J. M., Maphosa, F. & Sousa, D. Z., 2015, In: Reviews in Environmental Science & Bio-technology. 14, 3, p. 385-406Research output: Contribution to journal › Article › Academic › peer-review
68 Citations (Scopus) -
Perchlorate and chlorate reduction by the Crenarchaeon Aeropyrum pernix and two thermophilic Firmicutes
Liebensteiner, M. G., Pinkse, M. W. H., Nijsse, B., Verhaert, P. D. E. M., Tsesmetzis, N., Stams, A. J. M. & Lomans, B. P., 2015, In: Environmental Microbiology Reports. 7, 6, p. 936-945Research output: Contribution to journal › Article › Academic › peer-review
26 Citations (Scopus) -
Sulfur Reduction in Acid Rock Drainage Environments
Florentino, A. P., Weijma, J., Stams, A. J. M. & Sanchez Andrea, I., 2015, In: Environmental Science and Technology. 49, 19, p. 11746-11755Research output: Contribution to journal › Article › Academic › peer-review
64 Citations (Scopus) -
2014
A genomic view on syntrophic versus non-syntrophic lifestyle in anaerobic fatty acid degrading communities
Worm, P., Koehorst, J. J., Visser, M., Sedano Nunez, V. T., Schaap, P. J., Plugge, C. M., Sousa, D. Z. & Stams, A. J. M., 2014, In: Biochimica et Biophysica Acta. B, Bioenergetics. 1837, 12, p. 2004-2016Research output: Contribution to journal › Article › Academic › peer-review
Open Access82 Citations (Scopus) -
Chain elongation in anaerobic reactor microbiomes to recover resources from waste
Spirito, C. M., Richter, H., Rabaey, K., Stams, A. J. M. & Angenent, L. T., 2014, In: Current Opinion in Biotechnology. 27, p. 115-122Research output: Contribution to journal › Article › Academic › peer-review
396 Citations (Scopus)