Research output per year
Research output per year
- 27 results
Search results
-
2022
Analysis of host-pathogen gene association networks reveals patient-specific response to streptococcal and polymicrobial necrotising soft tissue infections
Jahagirdar, S. R., Morris, L., Benis, N., Oppegaard, O., Svenson, M., Hyldegaard, O., Skrede, S., Norrby-Teglund, A., Martins dos Santos, V. A. P. & Saccenti, E., 4 May 2022, In: BMC Medicine. 20, 173.Research output: Contribution to journal › Article › Academic › peer-review
Open Access7 Citations (Scopus) -
Decision support system and outcome prediction in a cohort of patients with necrotizing soft-tissue infections
Katz, S., Suijker, J., Hardt, C., Madsen, M. B., Meij de Vries, A., Pijpe, A., Skrede, S., Hyldegaard, O., Solligård, E., Norrby-Teglund, A., Saccenti, E. & Martins dos Santos, V. A. P., Nov 2022, In: International Journal of Medical Informatics. 167, 104878.Research output: Contribution to journal › Article › Academic › peer-review
Open Access10 Citations (Scopus) -
2021
Discriminatory plasma biomarkers predict specific clinical phenotypes of necrotizing soft-tissue infections
Palma Medina, L. M., Rath, E., Jahagirdar, S., Bruun, T., Madsen, M. B., Strålin, K., Unge, C., Hansen, M. B., Arnell, P., Nekludov, M., Hyldegaard, O., Lourda, M., Martins dos Santos, V. A. P., Saccenti, E., Skrede, S., Svensson, M. & Norrby-Teglund, A., 15 Jul 2021, In: Journal of Clinical Investigation. 131, 14, e149523.Research output: Contribution to journal › Article › Academic › peer-review
Open Access15 Citations (Scopus) -
Phenotype and multi-omics comparison of Staphylococcus and Streptococcus uncovers pathogenic traits and predicts zoonotic potential
Zondervan, N. A., Martins dos Santos, V. A. P., Suarez Diez, M. & Saccenti, E., 4 Feb 2021, In: BMC Genomics. 22, 102.Research output: Contribution to journal › Article › Academic › peer-review
Open Access6 Citations (Scopus) -
2020
Integrated Univariate, Multivariate, and Correlation-Based Network Analyses Reveal Metabolite-Specific Effects on Bacterial Growth and Biofilm Formation in Necrotizing Soft Tissue Infections
Afzal, M., Saccenti, E., Madsen, M. B., Hansen, M. B., Hyldegaard, O., Skrede, S., Martins Dos Santos, V. A. P., Norrby-Teglund, A. & Svensson, M., 7 Feb 2020, In: Journal of Proteome Research. 19, 2, p. 688-698Research output: Contribution to journal › Article › Academic › peer-review
Open Access16 Citations (Scopus) -
Necrotizing Soft Tissue Infection Staphylococcus aureus but not S. pyogenes Isolates Display High Rates of Internalization and Cytotoxicity Toward Human Myoblasts
Baude, J., Bastien, S., Gillet, Y., Leblanc, P., Itzek, A., Tristan, A., Bes, M., Duguez, S., Moreau, K., Diep, B. A., Norrby-Teglund, A., Henry, T., Vandenesch, F., Arnell, P., Bergey, F., Martins Dos Santos, V. A. P., Hyldegaard, O., Nekludov, M., Norrby-Teglund, A. & Pieper, D. & 2 others, , 15 Jan 2020, In: Journal of Infectious Diseases. 221, 2, p. 710-719 10 p.Research output: Contribution to journal › Article › Academic › peer-review
9 Citations (Scopus) -
2019
Consistency, inconsistency, and ambiguity of metabolite names in biochemical databases used for genome-scale metabolic modelling
Pham, N., van Heck, R. G. A., van Dam, J. C. J., Schaap, P. J., Saccenti, E. & Suarez-Diez, M., 6 Feb 2019, In: Metabolites. 9, 2, 28.Research output: Contribution to journal › Article › Academic › peer-review
Open Access27 Citations (Scopus) -
Metabolomics in systems medicine: an overview of methods and applications
Karakitsou, E., Foguet, C., de Atauri, P., Kultima, K., Khoonsari, P. E., Martins dos Santos, V. A. P., Saccenti, E., Rosato, A. & Cascante, M., 1 Jun 2019, In: Current Opinion in Systems Biology. 15, p. 91-99 9 p.Research output: Contribution to journal › Article › Academic › peer-review
10 Citations (Scopus) -
Patient’s characteristics and outcomes in necrotising soft-tissue infections: results from a Scandinavian, multicentre, prospective cohort study
Madsen, M. B., Skrede, S., Perner, A., Arnell, P., Nekludov, M., Bruun, T., Karlsson, Y., Hansen, M. B., Polzik, P., Hedetoft, M., Rosén, A., Saccenti, E., Bergey, F., Martins Dos Santos, V. A. P., Norrby-teglund, A. & Hyldegaard, O., Sept 2019, In: Intensive Care Medicine. 45, 9, p. 1241-1251Research output: Contribution to journal › Article › Academic › peer-review
121 Citations (Scopus) -
Simulation and reconstruction of metabolite-metabolite association networks using a metabolic dynamic model and correlation based-algorithms
Jahagirdar, S., Suarez-diez, M. & Saccenti, E., 21 Jan 2019, In: Journal of Proteome Research. 18, 3, p. 1099-1113Research output: Contribution to journal › Article › Academic › peer-review
22 Citations (Scopus) -
The Empusa code generator and its application to GBOL, an extendable ontology for genome annotation
van Dam, J. C. J., Koehorst, J. J., Vik, J. O., Martins dos Santos, V. A. P., Schaap, P. J. & Suarez-Diez, M., 4 Nov 2019, In: Scientific Data. 6, 1, 1 p., 254.Research output: Contribution to journal › Article › Academic › peer-review
Open Access5 Citations (Scopus) -
2018
Age and Sex Effects on Plasma Metabolite Association Networks in Healthy Subjects
Vignoli, A., Tenori, L., Luchinat, C. & Saccenti, E., 5 Jan 2018, In: Journal of Proteome Research. 17, 1, p. 97-107Research output: Contribution to journal › Article › Academic › peer-review
Open Access76 Citations (Scopus) -
Comparison of dimensionality assessment methods in Principal Component Analysis based on permutation tests
Vitale, R. & Saccenti, E., 15 Oct 2018, In: Chemometrics and Intelligent Laboratory Systems. 181, p. 79-94Research output: Contribution to journal › Article › Academic › peer-review
7 Citations (Scopus) -
Diabetes and necrotizing soft tissue infections—A prospective observational cohort study: Statistical analysis plan
Rosén, A., Arnell, P., Madsen, M. B., Nedrebø, B. G., Norrby-Teglund, A., Hyldegaard, O., dos Santos, V. M., Bergey, F., Saccenti, E. & Skrede, S., 1 Sept 2018, In: Acta Anaesthesiologica Scandinavica. 62, 8, p. 1171-1177Research output: Contribution to journal › Article › Academic › peer-review
Open Access2 Citations (Scopus) -
Group-wise ANOVA simultaneous component analysis for designed omics experiments
Saccenti, E., Smilde, A. K. & Camacho, J., 1 Jun 2018, In: Metabolomics. 14, 6, 73.Research output: Contribution to journal › Article › Academic › peer-review
Open Access24 Citations (Scopus) -
Group-wise partial least square regression
Camacho, J. & Saccenti, E., Mar 2018, In: Journal of Chemometrics. 32, 3, e2964.Research output: Contribution to journal › Article › Academic › peer-review
Open Access12 Citations (Scopus) -
Necrotizing soft tissue infections - a multicentre, prospective observational study (INFECT): Protocol and statistical analysis plan
Madsen, M. B., Skrede, S., Bruun, T., Arnell, P., Rosén, A., Nekludov, M., Karlsson, Y., Bergey, F., Saccenti, E., Martins dos Santos, V. A. P., Perner, A., Norrby-Teglund, A. & Hyldegaard, O., Feb 2018, In: Acta Anaesthesiologica Scandinavica. 62, 2, p. 272-279Research output: Contribution to journal › Article › Academic › peer-review
Open Access33 Citations (Scopus) -
Regulation of three virulence strategies of Mycobacterium tuberculosis: A success story
Zondervan, N. A., Van Dam, J. C. J., Schaap, P. J., Martins dos Santos, V. A. P. & Suarez-Diez, M., 1 Feb 2018, In: International Journal of Molecular Sciences. 19, 2, 347.Research output: Contribution to journal › Article › Academic › peer-review
Open Access37 Citations (Scopus) -
SAPP: functional genome annotation and analysis through a semantic framework using FAIR principles
Koehorst, J. J., van Dam, J. C. J., Saccenti, E., Martins Dos Santos, V. A. P., Suarez-Diez, M. & Schaap, P. J., 15 Apr 2018, In: Bioinformatics. 34, 8, p. 1401-1403Research output: Contribution to journal › Article › Academic › peer-review
Open Access33 Citations (Scopus) -
SyNDI: Synchronous network data integration framework
Lindfors, E., van Dam, J. C. J., Lam, C. M. C., Zondervan, N. A., Martins dos Santos, V. A. P. & Suarez-Diez, M., 6 Nov 2018, In: BMC Bioinformatics. 19, 1, 403.Research output: Contribution to journal › Article › Academic › peer-review
Open Access1 Citation (Scopus) -
2017
Considering Horn’s Parallel Analysis from a Random Matrix Theory Point of View
Saccenti, E. & Timmerman, M. E., 2017, In: Psychometrika. 82, 1, p. 186-209Research output: Contribution to journal › Article › Academic › peer-review
21 Citations (Scopus) -
Plasma and Serum Metabolite Association Networks: Comparability within and between Studies Using NMR and MS Profiling
Suarez-Diez, M., Adam, J., Adamski, J., Chasapi, S. A., Luchinat, C., Peters, A., Prehn, C., Santucci, C., Spyridonidis, A., Spyroulias, G. A., Tenori, L., Wang-Sattler, R. & Saccenti, E., 2017, In: Journal of Proteome Research. 16, 7, p. 2547-2559Research output: Contribution to journal › Article › Academic › peer-review
Open Access45 Citations (Scopus) -
2016
Approaches to sample size determination for multivariate data: Applications to PCA and PLS-DA of omics data
Saccenti, E. & Timmerman, M. E., 2016, In: Journal of Proteome Research. 15, 8, p. 2379-2393 1 p.Research output: Contribution to journal › Article › Academic › peer-review
92 Citations (Scopus) -
Entropy-Based Network Representation of the Individual Metabolic Phenotype
Saccenti, E., Menichetti, G., Ghini, V., Remondini, D., Tenori, L. & Luchinat, C., 2016, In: Journal of Proteome Research. 15, 9, p. 3298-3307Research output: Contribution to journal › Article › Academic › peer-review
Open Access20 Citations (Scopus) -
2015
Determining the number of components in principal components analysis: A comparison of statistical, crossvalidation and approximated methods
Saccenti, E. & Camacho, J., 2015, In: Chemometrics and Intelligent Laboratory Systems. 149, part A, p. 99-116Research output: Contribution to journal › Article › Academic › peer-review
47 Citations (Scopus) -
Effects of Sample Size and Dimensionality on the Performance of Four Algorithms for Inference of Association Networks in Metabonomics
Suarez Diez, M. & Saccenti, E., 2015, In: Journal of Proteome Research. 14, 12, p. 5119-5130Research output: Contribution to journal › Article › Academic › peer-review
21 Citations (Scopus) -
Probabilistic networks of blood metabolites in healthy subjects as indicators of latent cardiovascular risk
Saccenti, E., Suarez Diez, M., Luchinat, C., Santucci, C. & Tenori, L., 2015, In: Journal of Proteome Research. 14, 2, p. 1101-1111Research output: Contribution to journal › Article › Academic › peer-review
42 Citations (Scopus)