Ecology from Farm to Fork Of microbial drug Resistance and Transmission

Project: EU research project

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2023
The Economic Value of Antimicrobial Use in Livestock Production
Roskam, J. L., Oude Lansink, A. G. J. M. & Saatkamp, H. W., Oct 2023, In: Antibiotics. 12, 10, 1537.
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2022
Determinants for antimicrobial resistance genes in farm dust on 333 poultry and pig farms in nine European countries
Luiken, R. E. C., Heederik, D. J. J., Scherpenisse, P., Van Gompel, L., van Heijnsbergen, E., Greve, G. D., Jongerius-Gortemaker, B. G. M., Tersteeg-Zijderveld, M. H. G., Fischer, J., Juraschek, K., Skarżyńska, M., Zając, M., Wasyl, D., Wagenaar, J. A., Smit, L. A. M., Wouters, I. M., Mevius, D. J. & Schmitt, H., 15 May 2022, In: Environmental Research. 208, 112715.
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Risk factors for the abundance of antimicrobial resistance genes aph(3′)-III, erm(B), sul2 and tet(W) in pig and broiler faeces in nine European countries
Yang, D., Heederik, D. J. J., Mevius, D. J., Scherpenisse, P., Luiken, R. E. C., Van Gompel, L., Skarżyńska, M., Wadepohl, K., Chauvin, C., Van Heijnsbergen, E., Wouters, I. M., Greve, G. D., Jongerius-Gortemaker, B. G. M., Tersteeg-Zijderveld, M., ZajCrossed D Sign c, M., Wasyl, D., Juraschek, K., Fischer, J., Wagenaar, J. A. & Smit, L. A. M. & 1 others, Schmitt, H., Apr 2022, In: Journal of Antimicrobial Chemotherapy. 77, 4, p. 969-978 10 p.
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2021
Assigning defined daily/course doses for antimicrobials in turkeys to enable a cross-country quantification and comparison of antimicrobial use
Joosten, P., Sarrazin, S., Chauvin, C., Moyano, G., Wadepohl, K., Gompel, L. V., Wagenaar, J. A., Dewulf, J., Battisti, A., Caprioli, A., Aarestrup, F., Hald, T., Duarte, S., Wasyl, D., Krasucka, D., Biernacki, B., Szumilo, J., Daskalov, H., Saatkamp, H. & Stärk, K. & 11 others, Sanders, P., David, J., Gonzalez-Zorn, B., Blaha, T., Brandt, M., Graveland, H., Schmitt, H., Luiken, R. E. C., Heederik, D. J. J., Mevius, D. & van Essen, A., 12 Aug 2021, In: Antibiotics. 10, 8, 971.
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Genomic evolution of antimicrobial resistance in Escherichia coli
Leekitcharoenphon, P., Johansson, M. H. K., Munk, P., Malorny, B., Skarzyńska, M., Wadepohl, K., Moyano, G., Hesp, A., Veldman, K. T., Bossers, A., Zajac, M., Wasyl, D., Sanders, P., Gonzales-Zorn, B., Brouwer, M. S. M., Wagenaar, J. A., Heederik, D. J. J., Mevius, D. J. & Aarestrup, F. M., 23 Jul 2021, In: Scientific Reports. 11, 15108 .
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Latent class analysis to assess whole-genome sequencing versus broth microdilution for monitoring antimicrobial resistance in livestock
Hesp, A., Veldman, K., Brouwer, M. S. M., Wagenaar, J. A., Mevius, D. & van Schaik, G., 2021, In: Preventive Veterinary Medicine. 193, 105406.
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Metagenomics-based approach to source-attribution of antimicrobial resistance determinants-Identification of reservoir resistome signatures
Ribeiro Duarte, A. S., Röder, T., van Gompel, L., Petersen, T. N., Hansen, R. B., Hansen, I. M., Bossers, A., Aarestrup, F. M., Wagenaar, J. A. & Hald, T., 15 Jan 2021, In: Frontiers in Microbiology. 11, 601407.
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Risk factors for antimicrobial resistance in turkey farms: A cross-sectional study in three european countries
Horie, M., Yang, D., Joosten, P., Munk, P., Wadepohl, K., Chauvin, C., Moyano, G., Skarżyńska, M., Dewulf, J., Aarestrup, F. M., Blaha, T., Sanders, P., Gonzalez-Zorn, B., Wasyl, D., Wagenaar, J. A., Heederik, D., Mevius, D., Schmitt, H., Smit, L. A. M. & Van Gompel, L., 6 Jul 2021, In: Antibiotics. 10, 7, 820.
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2020
Addressing Learning Needs on the Use of Metagenomics in Antimicrobial Resistance Surveillance
Ribeiro Duarte, A. S., Stärk, K. D. C., Munk, P., Leekitcharoenphon, P., Bossers, A., Luiken, R., Sarrazin, S., Lukjancenko, O., Pamp, S. J., Bortolaia, V., Nissen, J. N., Kirstahler, P., van Gompel, L., Poulsen, C. S., Sommer Kaas, R., Hellmér, M., Hansen, R. B., Munoz Gomez, V. & Hald, T., 25 Feb 2020, In: Frontiers in Public Health. 8, 38
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Antimicrobial resistance prevalence in commensal Escherichia coli from broilers, fattening turkeys, fattening pigs and veal calves in European countries and association with antimicrobial usage at country level
Ceccarelli, D., Hesp, A., Van Der Goot, J., Joosten, P., Sarrazin, S., Wagenaar, J. A., Dewulf, J. & Mevius, D. J., 18 Mar 2020, In: Journal of Medical Microbiology. 69, 4, p. 537-547 11 p.
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Antimicrobial usage and resistance in companion animals: A cross-sectional study in three european countries
Joosten, P., Ceccarelli, D., Odent, E., Sarrazin, S., Graveland, H., Van Gompel, L., Battisti, A., Caprioli, A., Franco, A., Wagenaar, J. A., Mevius, D. & Dewulf, J., 1 Feb 2020, In: Antibiotics. 9, 2, 87.
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Association of antimicrobial usage with faecal abundance of aph(3’)-III, ermB, sul2 and tetW resistance genes in veal calves in three European countries
Yang, D., Van Gompel, L., Luiken, R. E. C., Sanders, P., Joosten, P., van Heijnsbergen, E., Wouters, I. M., Scherpenisse, P., Chauvin, C., Wadepohl, K., Greve, G. D., Jongerius-Gortemaker, B. G. M., Tersteeg-Zijderveld, M. H. G., Soumet, C., Skarżyńska, M., Juraschek, K., Fischer, J., Wasyl, D., Wagenaar, J. A. & Dewulf, J. & 4 others, Schmitt, H., Mevius, D. J., Heederik, D. J. J. & Smit, L. A. M., Oct 2020, In: International Journal of Antimicrobial Agents. 56, 4, 106131.
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Description and determinants of the faecal resistome and microbiome of farmers and slaughterhouse workers: A metagenome-wide cross-sectional study
Van Gompel, L., Luiken, R. E. C., Hansen, R. B., Munk, P., Bouwknegt, M., Heres, L., Greve, G. D., Scherpenisse, P., Jongerius-Gortemaker, B. G. M., Tersteeg-Zijderveld, M. H. G., García-Cobos, S., Dohmen, W., Dorado-García, A., Wagenaar, J. A., Urlings, B. A. P., Aarestrup, F. M., Mevius, D. J., Heederik, D. J. J., Schmitt, H. & Bossers, A. & 1 others, Smit, L. A. M., Oct 2020, In: Environment International. 143, 105939.
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Farm dust resistomes and bacterial microbiomes in European poultry and pig farms
Luiken, R. E. C., Van Gompel, L., Bossers, A., Munk, P., Joosten, P., Hansen, R. B., Knudsen, B. E., García-Cobos, S., Dewulf, J., Aarestrup, F. M., Wagenaar, J. A., Smit, L. A. M., Mevius, D. J., Heederik, D. J. J. & Schmitt, H., Oct 2020, In: Environment International. 143, 105971.
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Incompatibility and phylogenetic relationship of I-complex plasmids
Rozwandowicz, M., Hordijk, J., Bossers, A., Zomer, A. L., Wagenaar, J. A., Mevius, D. J. & Brouwer, M. S. M., May 2020, In: Plasmid. 109, 102502.
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Occupational exposure and carriage of antimicrobial resistance genes (tetW, ermB) in pig slaughterhouse workers
Van Gompel, L., Dohmen, W., Luiken, R. E. C., Bouwknegt, M., Heres, L., Van Heijnsbergen, E., Jongerius-Gortemaker, B. G. M., Scherpenisse, P., Greve, G. D., Tersteeg-Zijderveld, M. H. G., Wadepohl, K., Ribeiro Duarte, A. S., Muñoz-Gómez, V., Fischer, J., Skarżyńska, M., Wasyl, D., Wagenaar, J. A., Urlings, B. A. P., Dorado-García, A. & Wouters, I. M. & 3 others, Heederik, D. J. J., Schmitt, H. & Smit, L. A. M., 1 Mar 2020, In: Annals of Work Exposures and Health. 64, 2, p. 125-137 13 p.
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The relation between technical farm performance and antimicrobial use of broiler farms
Roskam, J. L., Oude Lansink, A. G. J. M. & Saatkamp, H. W., Mar 2020, In: Poultry Science. 99, 3, p. 1349-1356 8 p.
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2019
Associations between antimicrobial use and the faecal resistome on broiler farms from nine European countries
Luiken, R. E. C., Van Gompel, L., Munk, P., Sarrazin, S., Joosten, P., Dorado-García, A., Borup Hansen, R., Knudsen, B. E., Bossers, A., Wagenaar, J. A., Aarestrup, F. M., Dewulf, J., Mevius, D. J., Heederik, D. J. J., Smit, L. A. M. & Schmitt, H., Sept 2019, In: The Journal of antimicrobial chemotherapy. 74, 9, p. 2596-2604 9 p.
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Development of a simplified on-farm animal health and welfare benchmarking tool for pig herds
Wadepohl, K., Blaha, T., Van Gompel, L., Duarte, A. S. R., Nielsen, C. L., Saatkamp, H. W., Wagenaar, J. A. & Deemken, D., Oct 2019, In: Berliner und Münchener Tierärztliche Wochenschrift. 132, 9 p.
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Quantitative and qualitative analysis of antimicrobial usage at farm and flock level on 181 broiler farms in nine European countries
Joosten, P., Sarrazin, S., Van Gompel, L., Luiken, R. E. C., Mevius, D. J., Wagenaar, J. A., Heederik, D. J. J. & Dewulf, J., 1 Mar 2019, In: The Journal of antimicrobial chemotherapy. 74, 3, p. 798-806
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Quantitative and qualitative analysis of antimicrobial usage patterns in 180 selected farrow-to-finish pig farms from nine European countries based on single batch and purchase data
Sarrazin, S., Joosten, P., Van Gompel, L., Luiken, R. E. C., Mevius, D. J., Wagenaar, J. A., Heederik, D. J. J. & Dewulf, J., 1 Mar 2019, In: The Journal of antimicrobial chemotherapy. 74, 3, p. 807-816
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Successful Host Adaptation of IncK2 Plasmids
Rozwandowicz, M., Brouwer, M. S. M., Mughini-Gras, L., Wagenaar, J. A., Gonzalez-Zorn, B., Mevius, D. J. & Hordijk, J., 15 Oct 2019, In: Frontiers in Microbiology. 10, 2384.
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The antimicrobial resistome in relation to antimicrobial use and biosecurity in pig farming, a metagenome-wide association study in nine European countries
Van Gompel, L., Luiken, R. E. C., Sarrazin, S., Munk, P., Knudsen, B. E., Hansen, R. B., Bossers, A., Aarestrup, F. M., Dewulf, J., Wagenaar, J. A., Mevius, D. J., Schmitt, H., Heederik, D. J. J., Dorado-García, A. & Smit, L. A. M., Apr 2019, In: The Journal of antimicrobial chemotherapy. 74, 4, p. 865-876
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The technical and economic impact of veterinary interventions aimed at reducing antimicrobial use on broiler farms
Roskam, J. L., Oude Lansink, A. G. J. M. & Saatkamp, H. W., 1 Dec 2019, In: Poultry Science. 98, 12, p. 6644-6658 15 p.
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2018
Abundance and diversity of the faecal resistome in slaughter pigs and broilers in nine European countries
Munk, P., Knudsen, B. E., Lukjacenko, O., Duarte, A. S. R., Van Gompel, L., Luiken, R. E. C., Smit, L. A. M., Schmitt, H., Garcia, A. D., Hansen, R. B., Petersen, T. N., Bossers, A., Ruppé, E., Graveland, H., van Essen, A., Gonzalez-Zorn, B., Moyano, G., Sanders, P., Chauvin, C. & David, J. & 20 others, Battisti, A., Caprioli, A., Dewulf, J., Blaha, T., Wadepohl, K., Brandt, M., Wasyl, D., Skarzyńska, M., Zajac, M., Daskalov, H., Saatkamp, H. W., Stärk, K. D. C., Lund, O., Hald, T., Pamp, S. J., Vigre, H., Heederik, D., Wagenaar, J. A., Mevius, D. & Aarestrup, F. M., 23 Jul 2018, In: Nature Microbiology. 3, 8, p. 898-908
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Plasmids carrying antimicrobial resistance genes in Enterobacteriaceae
Rozwandowicz, M., Brouwer, M. S. M., Fischer, J., Wagenaar, J. A., Gonzalez-Zorn, B., Guerra, B., Mevius, D. J. & Hordijk, J., 1 May 2018, In: Journal of Antimicrobial Chemotherapy. 73, 5, p. 1121-1137
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Ecology from Farm to Fork Of microbial drug Resistance and Transmission

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