Development and application of high throughput computational methods for the identification of biologically significant genome-wide variation in host-microbe interactions

Project: PhD

Search results

  • 2015

    High-throughput open source computational methods for genetics and genomics

    Prins, J. C. P., 2015, Wageningen: Wageningen University. 136 p.

    Research output: Thesisinternal PhD, WU

    Open Access
  • 2014

    BioHackathon series in 2011 and 2012: penetration of ontology and linked data in life science domains

    Katayama, T., Wilkinson, M. D., Aoki-Kinoshita, K. F. & Prins, J. C. P., 2014, In: Journal of Biomedical Semantics. 5, 5.

    Research output: Contribution to journalArticleAcademicpeer-review

    Open Access
    30 Citations (Scopus)
  • 2013

    The 3rd DBCLS BioHackathon: improving life science data integration with Semantic Web technologies

    Katayama, T., Wilkinson, D. W., Micklem, G., Kawashima, S., Yamaguchi, A., Nakao, M., Yamamoto, T., Okamoto, S., Oouchida, K., Chung, H., Aerts, J., Afzal, H., Antezana, E., Arakawa, K., Aranda, B., Belleau, F., Bolleman, J., Bonnal, R. J. P., Chapman, B., Cock, P. J. A. & 46 others, Eriksson, T., Gordon, P. M. K., Goto, N., Hayashida, K., Horn, H., Ishiwata, R., Kaminuma, E., Kasprzyk, A., Kawaji, H., Kido, N., Kim, Y., Kinjo, A. R., Konishi, F., Kwon, K. H., Labarga, A., Lamprecht, A., Lin, Y., Lindenbaum, P., McCarthy, L., Morita, H., Murakami, K., Nagao, K., Nishida, K., Nishimura, K., Nishizawa, T., Ogishima, S., Ono, K., Oshita, K., Park, K., Prins, J. C. P., Saito, T., Samwald, M., Satagopam, V. P., Shigemoto, Y., Smith, R., Splendiani, A., Sugawara, H., Taylor, J., Vos, R. A., Withers, D., Yamasaki, C., Zmasek, C. M., Kawamoto, S., Okubo, K., Asai, K. & Takagi, T., 2013, In: Journal of Biomedical Semantics. 4, 6.

    Research output: Contribution to journalArticleAcademicpeer-review

    Open Access
    18 Citations (Scopus)
  • 2012

    Biogem: an effective tool based approach for scaling up open source software development in bioinformatics

    Bonnal, R. J. P., Smant, G. & Prins, J. C. P., 2012, In: Bioinformatics. 28, 7, p. 1035-1037

    Research output: Contribution to journalArticleAcademicpeer-review

    23 Citations (Scopus)
  • Genetical Genomics for Evolutionary Studies

    Prins, J. C. P., Smant, G. & Jansen, R. C., 2012, Evolutionary Genomics. Statistical and Computational Methods, Volume 2. Anisimova, M. (ed.). p. 469-485 556 p. (Methods in Molecular Biology; no. 856).

    Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

    2 Citations (Scopus)
  • High-throughput Molecular Docking Now in Reach for a Wider Biochemical Community

    Balan, D. M., Malinauskas, T., Prins, J. C. P. & Moller, S., 2012, 20th Euromicro International Conference on Parallel, Distributed and Network-based Processing, Thiruvanthapuram, India, 16-02-2012. Thiruvanthapuram, India, p. 617-621

    Research output: Chapter in Book/Report/Conference proceedingConference paperAcademic

    2 Citations (Scopus)
  • Scalable Computing for Evolutionary Genomics

    Prins, J. C. P., Belhachemi, D., Möller, S. & Smant, G., 2012, Evolutionary Genomics. Statistical and Computational Methods, Volume 2. Anisimova, M. (ed.). p. 529-545 556 p. (Methods in Molecular Biology; no. 856).

    Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

    4 Citations (Scopus)
  • Sharing Programming Resources Between Bio* Projects Through Remote Procedure Call and Native Call Stack Strategies

    Prins, J. C. P., Goto, N., Yates, A., Gautier, L., Willis, S., Fields, C. & Katayama, T., 2012, Evolutionary Genomics. Statistical and Computational Methods, Volume 2. Anisimova, M. (ed.). p. 513-527 556 p. (Methods in Molecular Biology; no. 856).

    Research output: Chapter in Book/Report/Conference proceedingChapterAcademicpeer-review

    2 Citations (Scopus)
  • xQTL workbench: a scalable web environment for multi-level QTL analysis

    Arends, D., van der Velde, K. J., Prins, J. C. P., Broman, K. W., Möller, S., Jansen, R. C. & Swertz, M. A., 2012, In: Bioinformatics. 28, 7, p. 1042-1044

    Research output: Contribution to journalArticleAcademicpeer-review

    10 Citations (Scopus)
  • 2011

    QTL Mapping in the Evolutionary Context

    Prins, J. C. P., 2011.

    Research output: Contribution to conferenceAbstract