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Research Output

2020

Imputation of 3 million SNPs in the Arabidopsis regional mapping population

Arouisse, B., Korte, A., van Eeuwijk, F. & Kruijer, W., May 2020, In : Plant Journal. 102, 4, p. 872-882

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Natural variation of photosynthetic efficiency in Arabidopsis thaliana accessions under low temperature conditions

Prinzenberg, A. E., Campos-Dominguez, L., Kruijer, W., Harbinson, J. & Aarts, M. G. M., Aug 2020, In : Plant Cell and Environment. 43, 8, p. 2000-2013

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Reciprocal cybrids reveal how organellar genomes affect plant phenotypes

Flood, P. J., Theeuwen, T. P. J. M., Schneeberger, K., Keizer, P., Kruijer, W., Severing, E., Kouklas, E., Hageman, J. A., Wijfjes, R., Calvo-Baltanas, V., Becker, F. F. M., Schnabel, S. K., Willems, L. A. J., Ligterink, W., Van Arkel, J., Mumm, R., Gualberto, J. M., Savage, L., Kramer, D. M., Keurentjes, J. J. B. & 5 others, Van Eeuwijk, F., Koornneef, M., Harbinson, J., Aarts, M. G. M. & Wijnker, E., 13 Jan 2020, In : Nature Plants. 6, 1, p. 13-21

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

Reconstruction of networks with direct and indirect genetic effects

Kruijer, W., Behrouzi, P., Bustos-Korts, D., Rodríguez-Álvarez, M. X., Mahmoudi, S. M., Yandell, B., Wit, E. & van Eeuwijk, F. A., 1 Apr 2020, In : Genetics. 214, 4, p. 781-807 27 p.

Research output: Contribution to journalArticleAcademicpeer-review

2019

Genomic prediction of maize yield across European environmental conditions

Millet, E. J., Kruijer, W., Coupel-Ledru, A., Alvarez Prado, S., Cabrera-Bosquet, L., Lacube, S., Charcosset, A., Welcker, C., van Eeuwijk, F. & Tardieu, F., 20 May 2019, In : Nature Genetics. 51, p. 952-956

Research output: Contribution to journalLetterAcademicpeer-review

13 Citations (Scopus)

Modelling strategies for assessing and increasing the effectiveness of new phenotyping techniques in plant breeding

van Eeuwijk, F. A., Bustos-Korts, D., Millet, E. J., Boer, M. P., Kruijer, W., Thompson, A., Malosetti, M., Iwata, H., Quiroz, R., Kuppe, C., Muller, O., Blazakis, K. N., Yu, K., Tardieu, F. & Chapman, S. C., May 2019, In : Plant Science. 282, p. 23-39

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
34 Citations (Scopus)
2018

Assessment of heterosis in two arabidopsis thaliana common-reference mapping populations

van Hulten, M. H. A., Paulo, M. J., Kruijer, W., Blankestijn-de Vries, H., Kemperman, B., Becker, F. F. M., Yang, J., Lauss, K., Stam, M. E., van Eeuwijk, F. A. & Keurentjes, J. J. B., 12 Oct 2018, In : PLoS ONE. 13, 10, e0205564.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)
2017

Genetic architecture of plant stress resistance: multi-trait genome-wide association mapping

Thoen, H. P. M., Davila Olivas, N. H., Kloth, K. J., Coolen, S., Huang, P., Aarts, M. G. M., Molenaar, J. A., Bakker, J., Bouwmeester, H. J., Broekgaarden, C., Bucher, J., Busscher-Lange, J., Cheng, X., van Dijk-Fradin, E. F., Jongsma, M. A., Julkowska, M. M., Keurentjes, J. J. B., Ligterink, W., Pieterse, C. M. J., Ruyter-Spira, C. P. & 13 others, Smant, G., van Schaik, C. C., van Wees, S. C. M., Visser, R. G. F., Voorrips, R. E., Vosman, B., Vreugdenhil, D., Warmerdam, S., Wiegers, G. L., van Heerwaarden, J., Kruijer, W. T., van Eeuwijk, F. A. & Dicke, M., 2017, In : New Phytologist. 213, 3, p. 1346-1362

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
64 Citations (Scopus)

Genome-wide association analysis reveals distinct genetic architectures for single and combined stress responses in Arabidopsis thaliana

Davila Olivas, N. H., Kruijer, W., Gort, G., Wijnen, C. L., van Loon, J. J. A. & Dicke, M., 2017, In : New Phytologist. 213, 2, p. 838-851

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
26 Citations (Scopus)

Natural variation in Arabidopsis thaliana reveals shoot ionome, biomass, and gene expression changes as biomarkers for zinc deficiency tolerance

Campos, A. C. A. L., Kruijer, W. T., Alexander, R., Akkers, R. C., Danku, J., Salt, D. E. & Aarts, M. G. M., 15 Jun 2017, In : Journal of Experimental Botany. 68, 13, p. 3643-3656

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

Natural variation of YELLOW SEEDLING1 affects photosynthetic acclimation of Arabidopsis thaliana

Van Rooijen, R., Kruijer, W., Boesten, R., Van Eeuwijk, F. A., Harbinson, J. & Aarts, M. G. M., 1 Dec 2017, In : Nature Communications. 8, 1, 9 p., 1421.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
12 Citations (Scopus)

SIEVE ELEMENT-LINING CHAPERONE1 restricts aphid feeding on arabidopsis during heat stress

Kloth, K. J., Busscher-Lange, J., Wiegers, G. L., Kruijer, W., Buijs, G., Meyer, R. C., Albrectsen, B. R., Bouwmeester, H. J., Dicke, M. & Jongsma, M. A., 1 Oct 2017, In : Plant Cell. 29, 10, p. 2450-2464

Research output: Contribution to journalArticleAcademicpeer-review

14 Citations (Scopus)
2016

AtWRKY22 promotes susceptibility to aphids and modulates salicylic acid and jasmonic acid signalling

Kloth, K. J., Wiegers, G. L., Busscher-Lange, J., van Haarst, J. C., Kruijer, W. T., Bouwmeester, H. J., Dicke, M. & Jongsma, M. A., 23 Apr 2016, In : Journal of Experimental Botany. 67, 1, p. 3383-3396

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
36 Citations (Scopus)

Genome-wide analysis of yield in Europe: Allelic effects vary with drought and heat scenarios

Millet, E. J., Welcker, C., Kruijer, W., Negro, S., Coupel-Ledru, A., Nicolas, S. D., Laborde, J., Bauland, C., Praud, S., Ranc, N., Presterl, T., Tuberosa, R., Bedo, Z., Draye, X., Usadel, B., Charcosset, A., van Eeuwijk, F. & Tardieu, F., 2016, In : Plant Physiology. 172, 2, p. 749-764

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
50 Citations (Scopus)

Genome-wide association mapping and genomic prediction elucidate the genetic architecture of morphological traits in arabidopsis

Kooke, R., Kruijer, W., Bours, R., Becker, F., Kuhn, A., van de Geest, H., Buntjer, J., Doeswijk, T., Guerra, J., Bouwmeester, H., Vreugdenhil, D. & Keurentjes, J. J. B., 2016, In : Plant Physiology. 170, 4, p. 2187-2203

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
34 Citations (Scopus)

Misspecification in mixed-model-based association analysis

Kruijer, W., 2016, In : Genetics. 202, 1, p. 363-366

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Phenomics for photosynthesis, growth and reflectance in Arabidopsis thaliana reveals circadian and long-term fluctuations in heritability

Flood, P. J., Kruijer, W., Schnabel, S. K., Schoor, R., Jalink, H., Snel, J. F. H., Harbinson, J. & Aarts, M. G. M., 2016, In : Plant Methods. 12, 1, 14.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
47 Citations (Scopus)
2015

Genome-Wide Association Analysis of Adaptation Using Environmentally Predicted Traits

van Heerwaarden, J., van Zanten, M. & Kruijer, W., 2015, In : Plos Genetics. 11, 10, 23 p., e1005594.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
8 Citations (Scopus)
Open Access
8 Citations (Scopus)

Marker-Based Estimation of Heritability in Immortal Populations

Kruijer, W. T., Boer, M. P., Malosetti, M., Flood, P. J., Engel, B., Kooke, R., Keurentjes, J. J. B. & van Eeuwijk, F. A., 2015, In : Genetics. 199, 2, p. 379-398 20 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
65 Citations (Scopus)
Open Access
6 Citations (Scopus)

Quantitative trait loci and candidate genes underlying genotype by environment interaction in the response of Arabidopsis thaliana to drought

El-Soda, M., Kruijer, W., Malosetti, M., Koornneef, M. & Aarts, M. G. M., 2015, In : Plant, Cell & Environment. 38, 3, p. 585-599

Research output: Contribution to journalArticleAcademicpeer-review

28 Citations (Scopus)
2013

Bayesian semi-parametric estimation of the long-memory parameter under FEXP-priors

Kruijer, W. T. & Rousseau, J., 2013, In : Electronic Journal of Statistics. 7, p. 2947-2969

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)
2012

High throughput screening with chlorophyll fluorescence imaging and its use in crop improvement

Harbinson, J., Prinzenberg, A. E., Kruijer, W. T. & Aarts, M. G. M., 2012, In : Current Opinion in Biotechnology. 23, 2, p. 221-226

Research output: Contribution to journalArticleAcademicpeer-review

33 Citations (Scopus)
2010

Adaptive Bayesian density estimation with location-scale mixtures

Kruijer, W. T., Rousseau, J. & van der Vaart, A., 2010, In : Electronic Journal of Statistics. 4, p. 1225-1257

Research output: Contribution to journalArticleAcademicpeer-review

44 Citations (Scopus)
2007

Analyzing spatial count data, with an application to weed counts

Kruijer, W. T., Stein, A., Schaafsma, W. & Heijting, S., 2007, In : Environmental and Ecological Statistics. 14, 4, p. 399-410

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Testing the spatial significance of weed patterns in arable land using Mead's test

Heijting, S., van der Werf, W., Kruijer, W. T. & Stein, A., 2007, In : Weed Research. 47, 5, p. 396-405

Research output: Contribution to journalArticleAcademicpeer-review

9 Citations (Scopus)
2005

Species specific spatial relations between weed patterns and soil characteristics

Heijting, S., Kruijer, W. T., Stein, A. & van der Werf, W., 2005. 2 p.

Research output: Contribution to conferenceConference paperAcademic