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Research Output 1989 2019

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internal PhD, WU
2019

Double kill : the DNase and RNase activity of CRISPR-Cas type III systems

Zhu, Y., 2019, Wageningen: Wageningen University. 184 p.

Research output: Thesisinternal PhD, WUAcademic

Open Access

The development of early life gut microbiota in health and allergic disease

Wopereis, H., 2019, Wageningen: Wageningen University. 184 p.

Research output: Thesisinternal PhD, WUAcademic

Zooming in: from multi-omics to single function in hyperthermophilic archaeon Sulfolobus solfataricus

Sierocinski, P., 2019, Wageningen: Wageningen University. 209 p.

Research output: Thesisinternal PhD, WUAcademic

Open Access
2018

Metabolic characterization and viable delivery of Akkermansia muciniphila for its future application

van der Ark, K., 2018, Wageningen: Wageningen University. 236 p.

Research output: Thesisinternal PhD, WUAcademic

Open Access
genetically engineered microorganisms
bacteria
emulsions
oxygen
development aid

Organic acid production from starchy waste by gut derived microorganisms

Palakawong Na Ayudthaya, S., 2018, Wageningen: Wageningen University. 219 p.

Research output: Thesisinternal PhD, WUAcademic

Open Access
2017

Probing the bacterial cell wall with chemical biology tools

Sminia, T. J., 2017, Wageningen: Wageningen University. 196 p.

Research output: Thesisinternal PhD, WUAcademic

Open Access
Labeling
Peptidoglycan
Cells
Oligosaccharides
Escherichia coli

Tuning for light and more: engineering phototrophy and membrane proteins in Escherichia coli

Claassens, N. J. H. P., 2017, Wageningen: Wageningen University. 328 p.

Research output: Thesisinternal PhD, WUAcademic

codons
membrane proteins
engineering
Escherichia coli
translation (genetics)
2016

Akkermansia species: phylogeny, physiology and comparative genomics

Ouwerkerk, J. P., 2016, Wageningen: Wageningen University. 178 p.

Research output: Thesisinternal PhD, WUAcademic

Comparative Physiology
Phylogeny
Genomics
Mucins
Gastrointestinal Tract

Biofunctionalized nanoporous aluminum oxide culture chips: for capture and growth of bacteria

Debrassi, A., 2016, Wageningen: Wageningen University. 218 p.

Research output: Thesisinternal PhD, WUAcademic

Open Access
Aluminum Oxide
Bacteria
Mannosides
Organophosphonates
Monolayers

Ecophysiology of novel intestinal butyrate-producing bacteria

Bui, T. P. N., 2016, Wageningen: Wageningen University. 202 p.

Research output: Thesisinternal PhD, WUAcademic

Butyrates
Bacteria
Lysine
Acetates
Acetyl Coenzyme A

Mining microbiota signatures in human intestinal tract metagenomes

Tims, S., 2016, Wageningen: Wageningen University. 264 p.

Research output: Thesisinternal PhD, WUAcademic

2015

Genomic and functional analysis of organohalide-respiring firmicutes

Kruse, T., 2015, Wageningen: Wageningen University. 255 p.

Research output: Thesisinternal PhD, WUAcademic

Host immunostimulation and substrate utilization of the gut symbiont Akkermansia muciniphila

Ottman, N. A., 2015, Wageningen: Wageningen University. 208 p.

Research output: Thesisinternal PhD, WUAcademic

immunostimulation (physiological)
mucins
symbionts
digestive system
breast milk
Bacillus smithii
thermophilic microorganisms
engineering
organisms
saccharification

Lipoxygenase : a game-changing enzyme

Heshof, R., 2015, Wageningen: Wageningen University. 160 p.

Research output: Thesisinternal PhD, WUAcademic

Aspergillus nidulans
Lipoxygenase
Aspergillus niger
Escherichia coli
Biomass

The genus Romboutsia : genomic and functional characterization of novel bacteria dedicated to life in the intestinal tract

Gerritsen, J., 2015, Wageningen: Wageningen University. 280 p.

Research output: Thesisinternal PhD, WUAcademic

Probiotics
Bacteria
Health
Pancreatitis
Names
2014

Biological hydrogen formation by thermophilic bacteria

Bielen, A. A. M., 2014, Wageningen: Wageningen University. 230 p.

Research output: Thesisinternal PhD, WUAcademic

Development of gut microbiota in pigs and the effect of diet, antibiotics and other environmental factors

Zhang, J., 2014, Wageningen: Wageningen University. 245 p.

Research output: Thesisinternal PhD, WUAcademic

intestinal microorganisms
antibiotics
piglets
starch
environmental factors
2013

Adaptive & heritable immunity in bacteria : on the regulation and mechanism of CRISPR defense

Westra, E. R., 2013, S.l.: s.n.. 254 p.

Research output: Thesisinternal PhD, WUAcademic

Clustered Regularly Interspaced Short Palindromic Repeats
Immunity
Bacteria

Metabolic shifts in microorganisms: the case of Lactococcus lactis

Goel, A., 2013, S.l.: s.n.. 184 p.

Research output: Thesisinternal PhD, WUAcademic

Lactococcus lactis
fructose
microorganisms
glucose
enzyme activity
2012

Post-genomic characterization of metabolic pathways in Sulfolobus solfataricus

Walther, J., 2012, S.l.: s.n.. 162 p.

Research output: Thesisinternal PhD, WUAcademic

zeaxanthin
biochemical pathways
genomics
arabinose
oxygen
2011

Bifidobacteria on the spot: a genomics approach on population dynamaics and interactions in the intestinal tract

Boesten, R. J., 2011, [S.l.: S.n.. 165 p.

Research output: Thesisinternal PhD, WUAcademic

Bifidobacterium
Genomics
Population
Gastrointestinal Tract
Infant Formula
2010

Analyzing the functionality of the human intestinal microbiota by stable isotope probing

Kovatcheva, P. P., 2010, [S.l.: S.n.. 189 p.

Research output: Thesisinternal PhD, WUAcademic

Isotopes
Lactose
Fermentation
Dietary Carbohydrates
Colon

Chasing organohalide respirers: ecogenomics approaches to assess the bioremediation capacity of soils

Maphosa, F., 2010, [S.l.: S.n.. 172 p.

Research output: Thesisinternal PhD, WUAcademic

Monitoring biodegradation capacity of organic pollutants in the environment

van der Zaan, B. M., 2010, [S.l.: S.n.. 158 p.

Research output: Thesisinternal PhD, WUAcademic

Unraveling piglet gut microbiota dynamics in response to feed additives

Perez-Gutierrez, O. N., 2010, [S.l.: S.n.. 198 p.

Research output: Thesisinternal PhD, WUAcademic

feed additives
intestinal microorganisms
gastrointestinal system
piglets
swine
2009

Analysis of diversity and function of the human small intestinal microbiota

Booijink, C. C. G. M., 2009, [S.l.: S.n.. 138 p.

Research output: Thesisinternal PhD, WUAcademic

intestinal microorganisms
effluents
Streptococcus
Veillonella
Ruminococcus gnavus

Analysis of molecular interactions between yoghurt bacteria by an integrated genomics approach

Sieuwerts, S., 2009, [S.l.: S.n.. 221 p.

Research output: Thesisinternal PhD, WUAcademic

mixed culture
yogurt
exopolysaccharides
Streptococcus thermophilus
genomics

Biochemical and structural analysis of thermostable esterases

Levisson, M., 2009, [S.l.: S.n.. 167 p.

Research output: Thesisinternal PhD, WUAcademic

Esterases
Structural analysis
Enzymes
Esters
Carboxylic Ester Hydrolases

Characterization and engineering of thermophilic aldolases : synthesizing nitrogen-heterocycles in biosynthetic routes

Wolterink-van Loo, S., 2009, [S.l.: S.n.. 134 p.

Research output: Thesisinternal PhD, WUAcademic

Aldehyde-Lyases
Aldehydes
Nitrogen
4-hydroxy-tetrahydrodipicolinate synthase
Substrates

Comparative functional genomics of amino acid metabolism of lactic acid bacteria

Pastink, M. I., 2009, [S.l.: S.n.. 184 p.

Research output: Thesisinternal PhD, WUAcademic

Genomics
Lactic Acid
Streptococcus thermophilus
Bacteria
Amino Acids

Dehalococcoides spp. in river sediments: insights in functional diversity and dechlorination activity

Tas, N., 2009, [S.l.: S.n.. 196 p.

Research output: Thesisinternal PhD, WUAcademic

2008

Assessment of the pectinolytic network of Aspergillus niger by functional genomics : insights from the transcriptome

Martens-Uzunova, E. S., 2008, [S.l.: S.n.. 208 p.

Research output: Thesisinternal PhD, WUAcademic

Aspergillus niger
transcriptome
genomics
galacturonic acid
pectins

Bile salt hydrolase in Lactobacillus plantarum: functional analysis and delivery to the intestinal tract of the host

Lambert, J. M., 2008, [S.l.]: S.n.. 159 p.

Research output: Thesisinternal PhD, WUAcademic

Computational genomics of hyperthermophiles

van de Werken, H. J. G., 2008, [S.l.]: S.n.. 151 p.

Research output: Thesisinternal PhD, WUAcademic

Caldicellulosiruptor saccharolyticus
genomics
genome
Thermococcales
Pyrococcus furiosus

Electron transport chains of lactic acid bacteria

Brooijmans, R. J. W., 2008, S.l.: S.n.. 228 p.

Research output: Thesisinternal PhD, WUAcademic

Lactic Acid
Bacteria
Heme
Vitamin K 2
Nitrates

Fine tuning of the Bacillus cereus stress respons: role of transcriptional regulators

van der Voort, M., 2008, [S.l.]: S.n.. 143 p.

Research output: Thesisinternal PhD, WUAcademic

Bacillus cereus
transcription factors
food spoilage
genes
pasta

Listeria monocytogenes growth limits and stress resistance mechanisms

van der Veen, S., 2008, [S.l.]: S.n.. 175 p.

Research output: Thesisinternal PhD, WUAcademic

resistance mechanisms
stress tolerance
Listeria monocytogenes
food pathogens
stress response

Modulation of folate production in lactic acid bacteria

Wegkamp, H. B. A., 2008, [S.l.]: S.n.. 176 p.

Research output: Thesisinternal PhD, WUAcademic

folic acid
lactic acid bacteria
Lactobacillus plantarum
Lactococcus lactis
fermentation

Oxidative stress response in Lactobacillus plantarum WCFS1: a functional genomics approach

Serrano, L. M., 2008, [S.l.]: S.n.. 240 p.

Research output: Thesisinternal PhD, WUAcademic

Lactobacillus plantarum
stress response
oxidative stress
genomics
fermentation

Transcriptome response of Lactobacillus plantarum to global regulator deficiency, stress and other environmental conditions

Stevens, M. J. A., 2008, [S.l.]: S.n.. 192 p.

Research output: Thesisinternal PhD, WUAcademic

Lactobacillus plantarum
transcriptome
phosphotransferases (kinases)
environmental factors
mannose

Unraveling the regulatory network of Lactobacillus plantarum WCFS1

Wels, M. W. W., 2008, [S.l.]: S.n.. 191 p.

Research output: Thesisinternal PhD, WUAcademic

Lactobacillus plantarum
genome
regulatory proteins
regulatory sequences
codons

Vitamin B12 synthesis in Lactobacillus reuteri

Branco Dos Santos, F., 2008, [S.l.]: S.n.. 2008 p.

Research output: Thesisinternal PhD, WUAcademic

2007

Characterization and engineering of thermostable glycoside hydrolases

van Lieshout, J. F. T., 2007, [S.l.]: S.n.. 137 p.

Research output: Thesisinternal PhD, WUAcademic

Diversity of the human gastrointestinal microbiota : novel perspectives from high throughput analyses

Rajilic-Stojanovic, M., 2007, [S.l.]: s.n.. 213 p.

Research output: Thesisinternal PhD, WUAcademic

Gastrointestinal Microbiome

Exploring the functionality of intestinal Bifidobacteria: a post-genomics approach

Klaassens, E. S., 2007, [S.l.]: S.n.. 175 p.

Research output: Thesisinternal PhD, WUAcademic

Bifidobacterium
genomics
carbohydrate metabolism
Bifidobacterium longum
sugars

Functional analysis of Lactobacillus plantarum WCFS1 : a proteomic approach

Cohen, D. P. A., 2007, [S.l.]: S.n.. 170 p.

Research output: Thesisinternal PhD, WUAcademic

Lactobacillus plantarum
proteomics
proteome
proteins
cells

Functional analysis of thermostable proteins involved in carbohydrate metabolism

Akerboom, A. P., 2007, [S.l.]: S.n.. 174 p.

Research output: Thesisinternal PhD, WUAcademic

carbohydrate metabolism
protein metabolism
Pyrococcus furiosus
Thermococcus kodakarensis
Thermococcales

Germination of Bacillus cereus spores : the role of germination receptors

Hornstra, L. M., 2007, [S.l.]: S.n.. 154 p.

Research output: Thesisinternal PhD, WUAcademic

Bacillus cereus
spores
germination
receptors
spore germination