20102020

Research output per year

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2020

Decomposition of mixtures of cover crop residues increases microbial functional diversity

Drost, S. M., Rutgers, M., Wouterse, M., de Boer, W. & Bodelier, P. L. E., 1 Mar 2020, In : Geoderma. 361, 114060.

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

DiSCount: Computer vision for automated quantification of Striga seed germination

Masteling, R., Voorhoeve, L., Ijsselmuiden, J., Dini-Andreote, F., De Boer, W. & Raaijmakers, J. M., 1 May 2020, In : Plant Methods. 16, 1, 60.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

Effect of nitrogen on fungal growth efficiency

Di Lonardo, D. P., van der Wal, A., Harkes, P. & de Boer, W., 1 Jun 2020, In : Plant Biosystems. 154, 4, p. 433-437 5 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access

The hidden potential of saprotrophic fungi in arable soil: Patterns of short-term stimulation by organic amendments

Clocchiatti, A., Hannula, S. E., van den Berg, M., Korthals, G. & de Boer, W., 1 Mar 2020, In : Applied Soil Ecology. 147, 103434.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Volatile-mediated antagonism of soil bacterial communities against fungi

Li, X., Garbeva, P., Liu, X., klein Gunnewiek, P. J. A., Clocchiatti, A., Hundscheid, M. P. J., Wang, X. & de Boer, W., Mar 2020, In : Environmental Microbiology. 22, 3, p. 1025-1035

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)
2019

Biological activities associated with the volatile compound 2,5-bis(1-methylethyl)-pyrazine

Janssens, T. K. S., Tyc, O., Besselink, H., de Boer, W. & Garbeva, P., 1 Feb 2019, In : FEMS Microbiology Letters. 366, 3

Research output: Contribution to journalArticleAcademicpeer-review

1 Citation (Scopus)

Effect of the amount of organic trigger compounds, nitrogen and soil microbial biomass on the magnitude of priming of soil organic matter

Paolo Di Lonardo, D., De Boer, W., Zweers, H. & van der Wal, A., 1 May 2019, In : PLoS ONE. 14, 5, e0216730.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Harnessing the microbiome to control plant parasitic weeds

Masteling, R., Lombard, L., de Boer, W., Raaijmakers, J. M. & Dini-Andreote, F., 1 Jun 2019, In : Current Opinion in Microbiology. 49, p. 26-33 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Legacy of land use history determines reprogramming of plant physiology by soil microbiome

Li, X., Jousset, A., de Boer, W., Carrión, V. J., Zhang, T., Wang, X. & Kuramae, E. E., 2019, In : ISME Journal. 13, p. 738-751

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
19 Citations (Scopus)

Pathogen suppression by microbial volatile organic compounds in soils

de Boer, W., Li, X., Meisner, A. & Garbeva, P., 1 Aug 2019, In : FEMS microbiology ecology. 95, 8, fiz105.

Research output: Contribution to journalArticleAcademicpeer-review

8 Citations (Scopus)

Plant presence reduces root and shoot litter decomposition rates of crops and wild relatives

Barel, J. M., Kuyper, T. W., de Boer, W. & De Deyn, G. B., May 2019, In : Plant and Soil. 438, 1-2, p. 313-327

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
2 Citations (Scopus)

Unexpected role of canonical aerobic methanotrophs in upland agricultural soils

Ho, A., Lee, H. J., Reumer, M., Meima-Franke, M., Raaijmakers, C., Zweers, H., de Boer, W., Van der Putten, W. H. & Bodelier, P. L. E., 1 Apr 2019, In : Soil Biology and Biochemistry. 131, p. 1-8 8 p.

Research output: Contribution to journalArticleAcademicpeer-review

9 Citations (Scopus)

Winter cover crop legacy effects on litter decomposition act through litter quality and microbial community changes

Barel, J. M., Kuyper, T. W., Paul, J., de Boer, W., Cornelissen, J. H. C. & de Deyn, G. B., 2019, In : Journal of Applied Ecology. 56, 1, p. 132-143

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
9 Citations (Scopus)
2018

Calling from distance: attraction of soil bacteria by plant root volatiles

Schulz-Bohm, K., Gerards, S., Hundscheid, M., Melenhorst, J., de Boer, W. & Garbeva, P., 22 Jan 2018, In : ISME Journal. 12, p. 1252-1262

Research output: Contribution to journalArticleAcademicpeer-review

37 Citations (Scopus)

Legacy effects of diversity in space and time driven by winter cover crop biomass and nitrogen concentration

Barel, J. M., Kuijper, T. W. M., de Boer, W., Douma, B. & de Deyn, G. B., 2018, In : Journal of Applied Ecology. 55, 1, p. 299-310

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
11 Citations (Scopus)

Relationship between home-field advantage of litter decomposition and priming of soil organic matter

di Lonardo, D. P., Manrubia, M., de Boer, W., Zweers, H., Veen, G. F. & van der Wal, A., 1 Nov 2018, In : Soil Biology and Biochemistry. 126, p. 49-56

Research output: Contribution to journalArticleAcademicpeer-review

12 Citations (Scopus)

Strategies to maintain natural biocontrol of soil-borne crop diseases during severe drought and rainfall events

Meisner, A. & de Boer, W., 2 Nov 2018, In : Frontiers in Microbiology. 9, NOV, 2279.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)

Suppression of soil-borne Fusarium pathogens of peanut by intercropping with the medicinal herb Atractylodes lancea

Li, X., de Boer, W., Zhang, Y., Ding, C., Zhang, T. & Wang, X., Jan 2018, In : Soil Biology and Biochemistry. 116, p. 120-130

Research output: Contribution to journalArticleAcademicpeer-review

22 Citations (Scopus)

Volatile-mediated suppression of plant pathogens is related to soil properties and microbial community composition

van Agtmaal, M., Straathof, A. L., Termorshuizen, A., Lievens, B., Hoffland, E. & de Boer, W., 1 Feb 2018, In : Soil Biology and Biochemistry. 117, p. 164-174

Research output: Contribution to journalArticleAcademicpeer-review

11 Citations (Scopus)
2017

Changing soil legacies to direct restoration of plant communities

Brinkman, E. P., Raaijmakers, C. E., De Boer, W. & Van Der Putten, W. H., 1 Sep 2017, In : AoB Plants. 9, 5, plx038.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
3 Citations (Scopus)

Dinner in the dark: Illuminating drivers of soil organic matter decomposition

van der Wal, A. & de Boer, W., 2017, In : Soil Biology and Biochemistry. 105, p. 45-48

Research output: Contribution to journalArticleAcademicpeer-review

25 Citations (Scopus)

Effects of bio-based residue amendments on greenhouse gas emission from agricultural soil are stronger than effects of soil type with different microbial community composition

Ho, A., Ijaz, U. Z., Janssens, T. K. S., Ruijs, R., Kim, S. Y., de Boer, W., Termorshuizen, A., van der Putten, W. H. & Bodelier, P. L. E., Dec 2017, In : Global change biology Bioenergy. 9, 12, p. 1707-1720

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
11 Citations (Scopus)

Exploring bacterial interspecific interactions for discovery of novel antimicrobial compounds

Tyc, O., de Jager, V. C. L., van den Berg, M., Gerards, S., Janssens, T. K. S., Zaagman, N., Kai, M., Svatos, A., Zweers, H., Besselink, H., de Boer, W. & Garbeva, P., 2017, In : Microbial Biotechnology. 10, 4, p. 910-925

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
19 Citations (Scopus)

Exploring the reservoir of potential fungal plant pathogens in agricultural soil

van Agtmaal, M., Straathof, A., Termorshuizen, A., Teurlincx, S., Hundscheid, M., Ruyters, S., Busschaert, P., Lievens, B. & de Boer, W., Dec 2017, In : Applied Soil Ecology. 121, p. 152-160

Research output: Contribution to journalArticleAcademicpeer-review

12 Citations (Scopus)

Fungal diversity and potential tree pathogens in decaying logs and stumps

van der Wal, A., klein Gunnewiek, P., de Hollander, M. & de Boer, W., 2017, In : Forest Ecology and Management. 406, p. 266-273

Research output: Contribution to journalArticleAcademicpeer-review

5 Citations (Scopus)

Fungal volatile compounds induce production of the secondary metabolite Sodorifen in Serratia plymuthica PRI-2C

Schmidt, R., de Jager, V., Zühlke, D., Wolff, C., Bernhardt, J., Cankar, K., Beekwilder, J., van IJcken, W., Sleutels, F., de Boer, W., Riedel, K. & Garbeva, P., 2017, In : Scientific Reports. 7, 862.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
32 Citations (Scopus)

Fungus-associated bacteriome in charge of their host behavior

Schulz-Bohm, K., Tyc, O., de Boer, W., Peereboom, N., Debets, F., Zaagman, N., Janssens, T. K. S. & Garbeva, P., 2017, In : Fungal Genetics and Biology. 102, p. 38-48

Research output: Contribution to journalArticleAcademicpeer-review

11 Citations (Scopus)

Low abundant soil bacteria can be metabolically versatile and fast growing

Kurm, V., van der Putten, W. H., de Boer, W., Naus-Wiezer, S. & Hol, W. H. G., 2017, In : Ecology. 98, 2, p. 555-564

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
17 Citations (Scopus)

Priorities for research in soil ecology

Eisenhauer, N., Antunes, P. M., Bennett, A. E., Birkhofer, K., Bissett, A., Bowker, M. A., Caruso, T., Chen, B., Coleman, D. C., de Boer, W., de Ruiter, P., DeLuca, T. H., Frati, F., Griffiths, B. S., Hart, M. M., Hättenschwiler, S., Haimi, J., Heethoff, M., Kaneko, N., Kelly, L. C. & 12 others, Leinaas, H. P., Lindo, Z., Macdonald, C., Rillig, M. C., Ruess, L., Scheu, S., Schmidt, O., Seastedt, T. R., van Straalen, N. M., Tiunov, A. V., Zimmer, M. & Powell, J. R., 2017, In : Pedobiologia. 63, p. 1-7

Research output: Contribution to journalArticleAcademicpeer-review

22 Citations (Scopus)

Shifts in rhizosphere fungal community during secondary succession following abandonment from agriculture

Hannula, S. E., Morriën, E., de Hollander, M., Van Der Putten, W. H., van Veen, J. A. & De Boer, W., 2017, In : ISME Journal. 11, 10, p. 2294-2304

Research output: Contribution to journalArticleAcademicpeer-review

59 Citations (Scopus)

Soil networks become more connected and take up more carbon as nature restoration progresses

Morriën, W. E., Hannula, S. E., Snoek, L. B., Helmsing, N. R., Zweers, H., de Hollander, M., Soto, R. L., Bouffaud, M. L., Buée, M., Dimmers, W. J., Duyts, H., Geisen, S., Girlanda, M., Griffiths, R. I., Jorgensen, H. B., Jensen, J., Plassart, P., Redecker, D., Schmelz, R. M., Schmidt, O. & 12 others, Thomson, B. C., Tisserant, E., Uroz, S., Winding, A., Bailey, M. J., Bonkowski, M., Faber, J. H., Martin, F., Lemanceau, P., de Boer, W., van Veen, J. A. & van der Putten, W. H., 8 Feb 2017, In : Nature Communications. 8, 10 p., 14349.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
155 Citations (Scopus)

Soil-wood interactions: Influence of decaying coniferous and broadleaf logs on composition of soil fungal communities

van der Wal, A., klein Gunnewiek, P. & de Boer, W., Dec 2017, In : Fungal Ecology. 30, p. 132-134

Research output: Contribution to journalArticleAcademicpeer-review

3 Citations (Scopus)

The prey’s scent – Volatile organic compound mediated interactions between soil bacteria and their protist predators

Schulz, K. B., Geisen, S., Wubs, E. R. J., Song, C., de Boer, W. & Garbeva, P., 2017, In : ISME Journal. 11, p. 817-820

Research output: Contribution to journalArticleAcademicpeer-review

35 Citations (Scopus)

Upscaling of fungal–bacterial interactions: from the lab to the field

de Boer, W., 2017, In : Current Opinion in Microbiology. 37, p. 35-41

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
22 Citations (Scopus)
2016

Controlling the microbiome: Microhabitat adjustments for successful biocontrol strategies in soil and human gut

Adam, E., Groenenboom, A. E., Kurm, V., Rajewska, M., Schmidt, R., Tyc, O., Weidner, S., Berg, G., de Boer, W. & Falcão Salles, J., 2016, In : Frontiers in Microbiology. 7, July, 1079.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
18 Citations (Scopus)

Genomic comparison of chitinolytic enzyme systems from terrestrial and aquatic bacteria

Bai, Y., Eijsink, V. G. H., Kielak, A. M., van Veen, J. A. & de Boer, W., 2016, In : Environmental Microbiology. 18, 1, p. 38-49

Research output: Contribution to journalArticleAcademicpeer-review

32 Citations (Scopus)

Microbial small talk: Volatiles in fungal-bacterial interactions

Schmidt, R., Etalo, D. W., de Jager, V., Gerards, S., Zweers, H., de Boer, W. & Garbeva, P., 2016, In : Frontiers in Microbiology. 6, 12 p., 01495.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
58 Citations (Scopus)

Patterns of natural fungal community assembly during initial decay of coniferous and broadleaf tree logs

van der Wal, A., Klein Gunnewiek, P. J. A., Cornelissen, J. H. C., Crowther, T. W. & de Boer, W., 2016, In : Ecosphere. 7, 7, e01393.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
17 Citations (Scopus)

The sapro-rhizosphere: Carbon flow from saprotrophic fungi into fungus-feeding bacteria

Ballhausen, M. B. & de Boer, W., 2016, In : Soil Biology and Biochemistry. 102, p. 14-17

Research output: Contribution to journalArticleAcademicpeer-review

22 Citations (Scopus)

Trait Differentiation within the Fungus-Feeding (Mycophagous) Bacterial Genus Collimonas

Ballhausen, M-B., Vandamme, P. & De Boer, W., 2016, In : PLoS ONE. 11, 6, e0157552.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
4 Citations (Scopus)
2015

A fragrant neighborhood: Volatile mediated bacterial interactions in soil

Schulz-Bohm, K., Zweers, H., de Boer, W. & Garbeva, P., 2015, In : Frontiers in Microbiology. 6, 11 p., 1212.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
41 Citations (Scopus)

Antifungal rhizosphere bacteria can increase as response to the presence of saprotrophic fungi

de Boer, W., Hundscheid, M. P. J., Klein Gunnewiek, P. J. A., De Ridder-Duine, A. S., Thion, C., van Veen, J. A. & van der Wal, A., 2015, In : PLoS ONE. 10, 9, 15 p., e0137988.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
20 Citations (Scopus)

Baiting of bacteria with hyphae of common soil fungi revealed a diverse group of potentially mycophagous secondary consumers in the rhizosphere

Rudnick, M. B., van Veen, J. A. & de Boer, W., 2015, In : Soil Biology and Biochemistry. 88, p. 73-82

Research output: Contribution to journalArticleAcademicpeer-review

22 Citations (Scopus)

Context dependency and saturating effects of loss of rare soil microbes on plant productivity

Hol, W. H. G., de Boer, W., de Hollander, M., Kuramae, E. E., Meisner, A. & van der Putten, W. H., 2015, In : Frontiers in Plant Science. 6, 10 p., 485.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
21 Citations (Scopus)

Early colonizers of unoccupied habitats represent a minority of the soil bacterial community

Wolf, A. B., Rudnick, M. B., de Boer, W. & Kowalchuk, G. A., 2015, In : FEMS microbiology ecology. 91, 5, fiv024.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
5 Citations (Scopus)

Legacy effects of anaerobic soil disinfestation on soil bacterial community composition and production of pathogen-suppressing volatiles

van Os, G. J., van Agtmaal, M., Hol, G., Hundscheid, M. P. J., Runia, W. T., Hordijk, C. & de Boer, W., 2015, In : Frontiers in Microbiology. 6, 701.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
35 Citations (Scopus)

Methods for baiting and enriching fungus-feeding (Mycophagous) rhizosphere bacteria

Ballhausen, M. B., Van Veen, J. A., Hundscheid, M. P. J. & De Boer, W., 2015, In : Frontiers in Microbiology. 6, DEC, 01416.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
6 Citations (Scopus)

Neglected role of fungal community composition in explaining variation in wood decay rates

van der Wal, A., Ottosson, E. G. B. & de Boer, W., 2015, In : Ecology. 96, 1, p. 124-133

Research output: Contribution to journalArticleAcademicpeer-review

95 Citations (Scopus)

Non-random species loss in bacterial communities reduces antifungal volatile production

Hol, G., Garbeva, P., Hordijk, C., Hundscheid, M. P. J., Klein Gunnewiek, P. J. A., van Agtmaal, M. & de Boer, W., 2015, In : Ecology. 96, 8, p. 2042-2048

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
44 Citations (Scopus)

Oxalic acid: a signal molecule for fungus-feeding bacteria of the genus Collimonas?

Rudnick, M. B., van Veen, J. A. & de Boer, W., 2015, In : Environmental Microbiology Reports. 7, 5, p. 709-714

Research output: Contribution to journalArticleAcademicpeer-review

15 Citations (Scopus)