If you made any changes in Pure these will be visible here soon.

Research Output 1997 2019

Filter
Review article
2019

Metabolomics in systems medicine: an overview of methods and applications

Karakitsou, E., Foguet, C., de Atauri, P., Kultima, K., Khoonsari, P. E., Martins dos Santos, V. A. P., Saccenti, E., Rosato, A. & Cascante, M., 1 Jun 2019, In : Current Opinion in Systems Biology. 15, p. 91-99 9 p.

Research output: Contribution to journalReview articleAcademicpeer-review

Metabolomics
Systems Analysis
Medicine
Precision Medicine
Bioelectric potentials

Risk-Based Bioengineering Strategies for Reliable Bacterial Vaccine Production

Kamminga, T., Slagman, S. J., Martins dos Santos, V. A. P., Bijlsma, J. J. E. & Schaap, P. J., Aug 2019, In : Trends in Biotechnology. 37, 8, p. 805-816

Research output: Contribution to journalReview articleAcademicpeer-review

Open Access
Bacterial Vaccines
Bioengineering
Vaccines
Antigens
Screening
2018
14 Citations (Scopus)

From correlation to causation: analysis of metabolomics data using systems biology approaches

Rosato, A., Tenori, L., Cascante, M., De Atauri Carulla, P. R., Martins dos Santos, V. A. P. & Saccenti, E., 1 Apr 2018, In : Metabolomics. 14, 4, 37.

Research output: Contribution to journalReview articleAcademicpeer-review

Open Access
Metabolomics
Systems Biology
Information Systems
Causality
Metabolome
8 Citations (Scopus)

Recommended strategies for spectral processing and post-processing of 1D 1H-NMR data of biofluids with a particular focus on urine

Emwas, A. H., Saccenti, E., Gao, X., McKay, R. T., Martins dos Santos, V. A. P., Roy, R. & Wishart, D. S., 1 Mar 2018, In : Metabolomics. 14, 3, 31.

Research output: Contribution to journalReview articleAcademicpeer-review

Open Access
Metabolomics
Nuclear magnetic resonance
Urine
Biochemical Phenomena
Processing
6 Citations (Scopus)

Studying microbial functionality within the gut ecosystem by systems biology

Hornung, B., Martins dos Santos, V. A. P., Smidt, H. & Schaap, P. J., 6 Mar 2018, In : Genes and Nutrition. 13, 1, 5.

Research output: Contribution to journalReview articleAcademicpeer-review

Open Access
Systems Biology
Ecosystem
Microbiota
Intestines
Life Style
2017
17 Citations (Scopus)

More than just a gut feeling: constraint-based genome-scale metabolic models for predicting functions of human intestinal microbes

van der Ark, K. C. H., van Heck, R. G. A., Martins Dos Santos, V. A. P., Belzer, C. & de Vos, W. M., 14 Jul 2017, In : Microbiome. 5, 1, p. 78

Research output: Contribution to journalReview articleAcademicpeer-review

Open Access
Ecosystem
Emotions
Genome
Phenotype
Homeostasis
2014
27 Citations (Scopus)

Green genes: bioinformatics and systems-biology innovations drive algal biotechnology

Reijnders, M. J. M. F., van Heck, R. G. A., Lam, C. M. C., Scaife, M. A., Martins dos Santos, V. A. P., Smith, A. G. & Schaap, P. J., 2014, In : Trends in Biotechnology. 32, 12, p. 617-626

Research output: Contribution to journalReview articleAcademicpeer-review

Microalgae
Systems Biology
Bioinformatics
Biotechnology
Computational Biology
19 Citations (Scopus)

Systems-level modeling of mycobacterial metabolism for the identification of new (multi-)drug targets

Rienksma, R. A., Suarez Diez, M., Spina, L., Schaap, P. J. & Martins dos Santos, V. A. P., 2014, In : Seminars in Immunology. 26, 6, p. 610-622

Research output: Contribution to journalReview articleAcademicpeer-review

Open Access
Mycobacterium tuberculosis
Pharmaceutical Preparations
Genome
Essential Genes
Metabolic Networks and Pathways
2013
16 Citations (Scopus)

Potential of proton-pumping rhodopsins: engineering photosystems into microorganisms

Claassens, N. J. H. P., Volpers, M., Martins Dos Santos, V. A. P., van der Oost, J. & de Vos, W. M., 2013, In : Trends in Biotechnology. 31, 11, p. 633-642

Research output: Contribution to journalReview articleAcademicpeer-review

Rhodopsin
Microorganisms
Protons
Light
Microbial Rhodopsins
2012
145 Citations (Scopus)

Industrial biotechnology of Pseudomonas putida and related species

Poblete-Castro, I., Becker, J., Dohnt, K., Martins Dos Santos, V. A. P. & Wittmann, C., 2012, In : Applied Microbiology and Biotechnology. 93, 6, p. 2279-2290

Research output: Contribution to journalReview articleAcademicpeer-review

Pseudomonas putida
Biotechnology
Metabolic Engineering
Xenobiotics
Gram-Negative Bacteria
8 Citations (Scopus)

Programmable bacterial catalysis – designing cells for biosynthesis of value-added compounds

Lam, M. C., Suarez Diez, M., Godinho, M. & Martins Dos Santos, V. A. P., 2012, In : FEBS Letters. 586, 15, p. 2184-2190

Research output: Contribution to journalReview articleAcademicpeer-review

Open Access
Synthetic Biology
Biosynthesis
Catalysis
Bacteria
Proteins
15 Citations (Scopus)

Streamlining genomes: toward the generation of simplified and stabilized microbial systems

Leprince, A., van Passel, M. W. J. & Martins Dos Santos, V. A. P., 2012, In : Current Opinion in Biotechnology. 23, 5, p. 651-658

Research output: Contribution to journalReview articleAcademicpeer-review

Genes
Genome
Chassis
Synthetic Biology
Systems Biology
2011
55 Citations (Scopus)
ecological footprint
process energy
Biological Sciences
ecosystems
ecologists
26 Citations (Scopus)

The logicome of environmental bacteria: merging catabolic and regulatory events with Boolean formalisms

Silva-Rocha, R., Tamames, J., Martins Dos Santos, V. A. P. & de Lorenzo, V., 2011, In : Environmental Microbiology. 13, 9, p. 2389-2402

Research output: Contribution to journalReview articleAcademicpeer-review

Environmental Pollutants
Pseudomonas putida
Environmental Biodegradation
Metabolic Networks and Pathways
biodegradation
2010
43 Citations (Scopus)

Systems biology of the gut: the interplay of food, microbiota and host at the mucosal interface

Martins Dos Santos, V. A. P., Müller, M. R. & de Vos, W. M., 2010, In : Current Opinion in Biotechnology. 21, 4, p. 539-550

Research output: Contribution to journalReview articleAcademicpeer-review

Systems Biology
Microbiota
Animals
Genes
Food