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Research Output 2015 2019

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Article
2019

Comparative genomics of chytrid fungi reveal insights into the obligate biotrophic and pathogenic lifestyle of Synchytrium endobioticum

van de Vossenberg, B. T. L. H., Warris, S., Nguyen, H. D. T., van Gent-Pelzer, M. P. E., Joly, D. L., van de Geest, H. C., Bonants, P. J. M., Smith, D. S., Lévesque, A. C. & van der Lee, T. A. J., 17 Jun 2019, In : Scientific Reports. 9, 1, 8672.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Synchytrium endobioticum
Chytridiomycota
lifestyle
genomics
fungi
2018
1 Citation (Scopus)

Correcting palindromes in long reads after whole-genome amplification

Warris, S., Schijlen, E. G. W. M., van de Geest, H. C., Vegesna, R., Hesselink, T., te Lintel Hekkert, B., Sanchez Perez, G. F., Medvedev, P., Makova, K. D. & de Ridder, D., 6 Nov 2018, In : BMC Genomics. 19, 798.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genome
DNA
Chromosomes
Technology

Plant Selenium Hyperaccumulation Affects Rhizosphere: Enhanced Species Richness and Altered Species Composition

Cochran, A. T., Bauer, J., Metcalf, J. L., Lovecka, P., de Jong, M. S., Warris, S., Mooijman, P. J. W., van der Meer, I. M., Knight, R. & Pilon-Smits, E. A. H., 2018, In : Phytobiomes Journal. 2, 2, p. 82-91

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
selenium
rhizosphere
species diversity
hyperaccumulators
selenites

pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment

Warris, S., Timal, N. R. N., Kempenaar, M., Poortinga, A. M., van de Geest, H., Varbanescu, A. L. & Nap, J. P., 1 Jan 2018, In : PLoS ONE. 13, 1, e0190279.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Boidae
Python
Sequence Alignment
sequence alignment
Program processors
2017
2 Citations (Scopus)

Fusarium in the age of genomics

Waalwijk, C., Vanheule, A., Audenaert, K., Zhang, H., Warris, S., van de Geest, H. C. & van der Lee, T. A. J., 2017, In : Tropical Plant Pathology. 42, 3, p. 184-189

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Fusarium
genomics
genome
transposons
chromosomes
4 Citations (Scopus)

Identification of methylated GnTI-dependent N-glycans in Botryococcus brauni

Schulze, S., Urzica, E., Reijnders, M. J. M. F., van de Geest, H., Warris, S., Bakker, L. V., Fufezan, C., Martins dos Santos, V. A. P., Schaap, P. J., Peters, S. A. & Hippler, M., 2017, In : New Phytologist. 215, 4, p. 1361-1369

Research output: Contribution to journalArticleAcademicpeer-review

Botryococcus
Polysaccharides
polysaccharides
Microalgae
microalgae
2016
19 Citations (Scopus)

Living apart together: Crosstalk between the core and supernumerary genomes in a fungal plant pathogen

Vanheule, A., Audenaert, K., Warris, S., van de Geest, H., Schijlen, E., Höfte, M., De Saeger, S., Haesaert, G., Waalwijk, C. & van der Lee, T., 2016, In : BMC Genomics. 17, 18 p., 670.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genome
DNA Transposable Elements
Chromosomes
Gene Duplication
Fungi
2015
6 Citations (Scopus)

Flexible, fast and accurate sequence alignment profiling on GPGPU with PaSWAS

Warris, S., Yalcin, F., Jackson, K. J. & Nap, J. P. H., 2015, In : PLoS ONE. 10, 4, 13 p., e0122524.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Sequence Alignment
sequence alignment
Software
value added
immunoglobulins

Living apart together: crosstalk between the core and supernumerary genomes in Fusarium poae

Vanheule, A., Audenaert, K., Warris, S., van de Geest, H. C., Schijlen, E. G. W. M., Höfte, M., de Saeger, S., Haesaert, G., Waalwijk, C. & van der Lee, T. A. J., 2015, In : Gewasbescherming. 46, 5, p. 154-154

Research output: Contribution to journalArticleProfessional

Open Access