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Research Output 2015 2019

2019

Application of high performance compute technology in bioinformatics

Warris, S., 2019, Wageningen: Wageningen University. 156 p.

Research output: Thesisinternal PhD, WUAcademic

Open Access

Comparative genomics of chytrid fungi reveal insights into the obligate biotrophic and pathogenic lifestyle of Synchytrium endobioticum

van de Vossenberg, B. T. L. H., Warris, S., Nguyen, H. D. T., van Gent-Pelzer, M. P. E., Joly, D. L., van de Geest, H. C., Bonants, P. J. M., Smith, D. S., Lévesque, A. C. & van der Lee, T. A. J., 17 Jun 2019, In : Scientific Reports. 9, 1, 8672.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Synchytrium endobioticum
Chytridiomycota
lifestyle
genomics
fungi

Use of disease suppressiveness in the battle against potato blackleg

van der Wolf, J. M., Coipan, E. C., Krijger, M. C., Kastelein, P., Nijhuis, E. H., Kurm, V., Warris, S. & Fokkema, J., 2019.

Research output: Contribution to conferenceAbstractAcademic

2018
1 Citation (Scopus)

Correcting palindromes in long reads after whole-genome amplification

Warris, S., Schijlen, E. G. W. M., van de Geest, H. C., Vegesna, R., Hesselink, T., te Lintel Hekkert, B., Sanchez Perez, G. F., Medvedev, P., Makova, K. D. & de Ridder, D., 6 Nov 2018, In : BMC Genomics. 19, 798.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genome
DNA
Chromosomes
Technology

Pacasus 1.1.1

Warris, S., Timal, N. R. N. & van Haarst, J. C., 15 Jan 2018

Research output: Non-textual formSoftwareOther research output

Open Access
cleaning
genome
nanopores

Plant Selenium Hyperaccumulation Affects Rhizosphere: Enhanced Species Richness and Altered Species Composition

Cochran, A. T., Bauer, J., Metcalf, J. L., Lovecka, P., de Jong, M. S., Warris, S., Mooijman, P. J. W., van der Meer, I. M., Knight, R. & Pilon-Smits, E. A. H., 2018, In : Phytobiomes Journal. 2, 2, p. 82-91

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
selenium
rhizosphere
species diversity
hyperaccumulators
selenites

Professional, easy to use and robust bioinformatic tools

Warris, S. & van der Lee, T. A. J., 12 Dec 2018. 1 p.

Research output: Contribution to conferenceAbstractAcademic

Open Access

pyPaSWAS: Python-based multi-core CPU and GPU sequence alignment

Warris, S., Timal, N. R. N., Kempenaar, M., Poortinga, A. M., van de Geest, H., Varbanescu, A. L. & Nap, J. P., 1 Jan 2018, In : PLoS ONE. 13, 1, e0190279.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Boidae
Python
Sequence Alignment
sequence alignment
Program processors
2017
2 Citations (Scopus)

Fusarium in the age of genomics

Waalwijk, C., Vanheule, A., Audenaert, K., Zhang, H., Warris, S., van de Geest, H. C. & van der Lee, T. A. J., 2017, In : Tropical Plant Pathology. 42, 3, p. 184-189

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Fusarium
genomics
genome
transposons
chromosomes
4 Citations (Scopus)

Identification of methylated GnTI-dependent N-glycans in Botryococcus brauni

Schulze, S., Urzica, E., Reijnders, M. J. M. F., van de Geest, H., Warris, S., Bakker, L. V., Fufezan, C., Martins dos Santos, V. A. P., Schaap, P. J., Peters, S. A. & Hippler, M., 2017, In : New Phytologist. 215, 4, p. 1361-1369

Research output: Contribution to journalArticleAcademicpeer-review

Botryococcus
Polysaccharides
polysaccharides
Microalgae
microalgae

Suppressiveness of Potato against Dickeya solani

van der Wolf, J. M., Coipan, E. C., Kastelein, P., Krijger, M. C., Tom, J., Riksen, N., Nijhuis, E. H., Warris, S. & Fokkema, J., 2017, Euphresco III Dickeya / Pectobacterium workshop: programme & Abstracts. p. 8-8 1 p.

Research output: Chapter in Book/Report/Conference proceedingAbstractAcademic

2016

Characterization of Pseudomonas species causing brown blotch of Agaricus bisporis

van der Wolf, J. M., Kastelein, P., Krijger, M. C., Hendriks, M. J. A., van der Lee, T. A. J., Warris, S., Stol, W. & Amsing, J., 2016.

Research output: Contribution to conferenceAbstractAcademic

Characterization of Pseudomonas species causing brown blotch of Agaricus bisporis.

van der Wolf, J. M., Kastelein, P., Krijger, M. C., Hendriks, M. J. A., Baars, J. J. P., Amsing, J. G. M., van der Lee, T. A. J. & Warris, S., 2016, 19th ISMS Congress proceedings. International Society for Mushroom Science (ISMS), Vol. 19.

Research output: Chapter in Book/Report/Conference proceedingConference contributionAcademic

Agaricus
mushrooms
Pseudomonas
Pseudomonas gingeri
Pseudomonas tolaasii
19 Citations (Scopus)

Living apart together: Crosstalk between the core and supernumerary genomes in a fungal plant pathogen

Vanheule, A., Audenaert, K., Warris, S., van de Geest, H., Schijlen, E., Höfte, M., De Saeger, S., Haesaert, G., Waalwijk, C. & van der Lee, T., 2016, In : BMC Genomics. 17, 18 p., 670.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Genome
DNA Transposable Elements
Chromosomes
Gene Duplication
Fungi

Suppressiveness of casing material against bacterial blotch.

van der Wolf, J. M., Kastelein, P., Krijger, M. C., Hendriks, M. J. A., van der Lee, T. A. J., Taparia, T., Warris, S., Stol, W. & Amsing, J., 2016.

Research output: Contribution to conferenceAbstractAcademic

2015
6 Citations (Scopus)

Flexible, fast and accurate sequence alignment profiling on GPGPU with PaSWAS

Warris, S., Yalcin, F., Jackson, K. J. & Nap, J. P. H., 2015, In : PLoS ONE. 10, 4, 13 p., e0122524.

Research output: Contribution to journalArticleAcademicpeer-review

Open Access
Sequence Alignment
sequence alignment
Software
value added
immunoglobulins

Living apart together: crosstalk between the core and supernumerary genomes in Fusarium poae

Vanheule, A., Audenaert, K., Warris, S., van de Geest, H. C., Schijlen, E. G. W. M., Höfte, M., de Saeger, S., Haesaert, G., Waalwijk, C. & van der Lee, T. A. J., 2015, In : Gewasbescherming. 46, 5, p. 154-154

Research output: Contribution to journalArticleProfessional

Open Access