Sven Warris

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15 Article
6 Abstract
1 Conference paper
1 Comment/Letter to the editor
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Advancing Fair Data Practices through integrated tools and Community engagement at WUR
Warris, S., 2023, 3 p. Wageningen University & Research.
Research output: Other contribution › Pamphlet

Open Access
High-throughput phenotyping and machine learning applications
Warris, S. & van de Zedde, R., 2022, Abstract book BioSB 2022. p. 84-84
Research output: Chapter in Book/Report/Conference proceeding › Abstract

Open Access
Species Identity, Life History, and Geographic Distance Influence Gut Bacterial Communities in Lab-Reared and European Field-Collected Culicoides Biting midges
Möhlmann, T. W. R., ter Braak, C. J. F., te Beest, D. E., Hendriks, M., Nijhuis, E. H., Warris, S., Drolet, B. S., van Overbeek, L. & Koenraadt, C. J. M., Jul 2022, In: Microbial Ecology. 84, 1, p. 267-284
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
8 Citations (Scopus)
Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization
Gauthier, J., Boulain, H., van Vugt, J. J. F. A., Baudry, L., Persyn, E., Aury, J. M., Noel, B., Bretaudeau, A., Legeai, F., Warris, S., Chebbi, M. A., Dubreuil, G., Duvic, B., Kremer, N., Gayral, P., Musset, K., Josse, T., Bigot, D., Bressac, C. & Moreau, S. & 31 others, Periquet, G., Harry, M., Montagné, N., Boulogne, I., Sabeti-Azad, M., Maïbèche, M., Chertemps, T., Hilliou, F., Siaussat, D., Amselem, J., Luyten, I., Capdevielle-Dulac, C., Labadie, K., Merlin, B. L., Barbe, V., de Boer, J. G., Marbouty, M., Cônsoli, F. L., Dupas, S., Hua-Van, A., Le Goff, G., Bézier, A., Jacquin-Joly, E., Whitfield, J. B., Vet, L. E. M., Smid, H. M., Kaiser, L., Koszul, R., Huguet, E., Herniou, E. A. & Drezen, J. M., 30 Jul 2021, In: Communications Biology. 4, 1, 940.
Research output: Contribution to journal › Comment/Letter to the editor › Academic

Open Access

3 Citations (Scopus)
Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization
Gauthier, J., Boulain, H., van Vugt, J. J. F. A., Baudry, L., Persyn, E., Aury, J. M., Noel, B., Bretaudeau, A., Legeai, F., Warris, S., Chebbi, M. A., Dubreuil, G., Duvic, B., Kremer, N., Gayral, P., Musset, K., Josse, T., Bigot, D., Bressac, C. & Moreau, S. & 31 others, Periquet, G., Harry, M., Montagné, N., Boulogne, I., Sabeti-Azad, M., Maïbèche, M., Chertemps, T., Hilliou, F., Siaussat, D., Amselem, J., Luyten, I., Capdevielle-Dulac, C., Labadie, K., Merlin, B. L., Barbe, V., de Boer, J. G., Marbouty, M., Cônsoli, F. L., Dupas, S., Hua-Van, A., Le Goff, G., Bézier, A., Jacquin-Joly, E., Whitfield, J. B., Vet, L. E. M., Smid, H. M., Kaiser, L., Koszul, R., Huguet, E., Herniou, E. A. & Drezen, J. M., 22 Jan 2021, In: Communications Biology. 4, 1, 104.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
44 Citations (Scopus)

Species identity, life history, and geographic distance influence gut bacterial communities in lab-reared and European field-collected Culicoides biting midges
Möhlmann, T. W. R. (Creator), ter Braak, C. J. F. (Creator), te Beest, D. E. (Creator), Hendriks, M. (Creator), Nijhuis, E. H. (Creator), Warris, S. (Creator), Drolet, B. S. (Creator), van Overbeek, L. (Creator) & Koenraadt, C. J. M. (Creator), Wageningen University & Research, 20 Aug 2021
https://www.ncbi.nlm.nih.gov/bioproject/756562
Dataset
Whole-genome amplification (WGA) create specific chimeric fragments, which consist mainly of palindrome sequences. We developed the tool Pacasus to detect and correct these palindromic sequences in long reads, for example from PacBio and Nanopore
Warris, S. (Creator), Schijlen, E. G. W. M. (Creator), van de Geest, H. C. (Creator), Vegesna, R. (Creator), Hesselink, T. (Creator), te Lintel Hekkert, B. (Creator), Sanchez Perez, G. F. (Creator), Medvedev, P. (Creator), Makova, K. D. (Creator) & de Ridder, D. (Creator), Wageningen UR, 31 Jul 2017
https://www.ebi.ac.uk/ena/data/view/PRJEB21791
Dataset
Fusarium poae Genome sequencing and assembly
Vanheule, A. (Creator), Audenaert, K. (Creator), Warris, S. (Creator), van de Geest, H. C. (Creator), Schijlen, E. G. W. M. (Creator), Höfte, M. (Creator), De Saeger, S. (Creator), Haesaert, G. (Creator), Waalwijk, C. (Creator) & van der Lee, T. A. J. (Creator), Wageningen UR, 3 Jun 2016
http://www.ebi.ac.uk/ena/data/view/PRJNA319914
Dataset
Genome sequencing of Golubevia sp isolates
Russ, L. (Creator), Warris, S. (Creator), Lombaers-Van der Plas, C. (Creator), Groenenboom-De Haas, L. H. (Creator), Cordewener, J. H. G. (Creator), Schijlen, E. (Creator) & Köhl, J. (Creator), Wageningen University & Research, 3 Oct 2019
https://www.ncbi.nlm.nih.gov/bioproject/575625
Dataset
Functional amplicon sequencing of suppressive soil
Tracanna, V. (Creator), Ossowicki, A. (Creator), Petrus, M. L. C. (Creator), Overduin, S. (Creator), Terlouw, B. R. (Creator), Lund, G. (Creator), Robinson, S. L. (Creator), Warris, S. (Creator), Schijlen, E. G. W. M. (Creator), Van Wezel, G. P. (Creator), Raaijmakers, J. M. (Creator), Garbeva, P. (Creator) & Medema, M. H. (Creator), Wageningen University & Research, 6 Apr 2021
https://www.ncbi.nlm.nih.gov/bioproject/719981
Dataset

FAIR Data & ISA standard: FAIR Data & ISA standard Using the ISA standard for collecting and sharing data
Warris, S. (Speaker) & van de Zedde, R. (Speaker)
1 Feb 2024
Activity: Talk/presentation/lecture › Oral presentation › Professional
Use of disease suppressiveness in the battle against potato blackleg
van der Wolf, J. M. (Speaker), Coipan, E. C. (Contributor), Krijger, M. C. (Contributor), Kastelein, P. (Contributor), Nijhuis, E. H. (Contributor), Kurm, V. (Contributor), Warris, S. (Contributor) & Fokkema, J. (Contributor)
Sept 2019
Activity: Talk/presentation/lecture › Oral presentation › Other
Professional, easy to use and robust bioinformatic tools
Warris, S. (Speaker) & van der Lee, T. A. J. (Contributor)
12 Dec 2018
Activity: Talk/presentation/lecture › Oral presentation › Other
Characterization of Pseudomonas species causing brown blotch of Agaricus bisporis
van der Wolf, J. M. (Speaker), Kastelein, P. (Contributor), Krijger, M. C. (Contributor), Hendriks, M. J. A. (Contributor), van der Lee, T. A. J. (Contributor), Warris, S. (Contributor), Stol, W. (Contributor) & Amsing, J. G. M. (Contributor)
30 May 2016
Activity: Talk/presentation/lecture › Oral presentation › Other

Microservices to connect genetic maps to (pan)genomes (KB-38-001-015)
Warris, S. (Project Leader)
1/01/19 → 31/12/19
Project: LVVN project
Low-cost high performance / high trhroughput biocomputing
Warris, S. (PhD candidate), de Ridder, D. (Promotor) & Nap, J.-P. (Co-promotor)
1/07/13 → 22/10/19
Project: PhD

Sven Warris

Fingerprint

Collaborations and top research areas from the last five years

Dive into details

Advancing Fair Data Practices through integrated tools and Community engagement at WUR

High-throughput phenotyping and machine learning applications

Species Identity, Life History, and Geographic Distance Influence Gut Bacterial Communities in Lab-Reared and European Field-Collected Culicoides Biting midges

Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization

Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization

Species identity, life history, and geographic distance influence gut bacterial communities in lab-reared and European field-collected Culicoides biting midges

Whole-genome amplification (WGA) create specific chimeric fragments, which consist mainly of palindrome sequences. We developed the tool Pacasus to detect and correct these palindromic sequences in long reads, for example from PacBio and Nanopore

Fusarium poae Genome sequencing and assembly

Genome sequencing of Golubevia sp isolates

Functional amplicon sequencing of suppressive soil

FAIR Data & ISA standard: FAIR Data & ISA standard Using the ISA standard for collecting and sharing data

Use of disease suppressiveness in the battle against potato blackleg

Professional, easy to use and robust bioinformatic tools

Characterization of Pseudomonas species causing brown blotch of Agaricus bisporis

Microservices to connect genetic maps to (pan)genomes (KB-38-001-015)

Low-cost high performance / high trhroughput biocomputing

Sven Warris

Fingerprint

Collaborations and top research areas from the last five years

Research output

Datasets

Activities

Projects