Sven Warris

dr.

Researcher DLO, BIOS Applied Bioinformatics

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13 Article
5 Abstract
1 Conference paper
1 Software
More
- 1 internal PhD, WU
- 1 Working paper

Chromosomal scale assembly of parasitic wasp genome reveals symbiotic virus colonization
Gauthier, J., Boulain, H., van Vugt, J. J. F. A., Baudry, L., Persyn, E., Aury, J. M., Noel, B., Bretaudeau, A., Legeai, F., Warris, S., Chebbi, M. A., Dubreuil, G., Duvic, B., Kremer, N., Gayral, P., Musset, K., Josse, T., Bigot, D., Bressac, C., Moreau, S. & 31 others, Periquet, G., Harry, M., Montagné, N., Boulogne, I., Sabeti-Azad, M., Maïbèche, M., Chertemps, T., Hilliou, F., Siaussat, D., Amselem, J., Luyten, I., Capdevielle-Dulac, C., Labadie, K., Merlin, B. L., Barbe, V., de Boer, J. G., Marbouty, M., Cônsoli, F. L., Dupas, S., Hua-Van, A., Le Goff, G., Bézier, A., Jacquin-Joly, E., Whitfield, J. B., Vet, L. E. M., Smid, H. M., Kaiser, L., Koszul, R., Huguet, E., Herniou, E. A. & Drezen, J. M., 22 Jan 2021, In: Communications Biology. 4, 1, 104.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
1 Citation (Scopus)
Chromosomal resolution reveals symbiotic virus colonization of parasitic wasp genomes
Gauthier, J., Boulain, H., van Vugt, J. F. A., Baudry, L., Persyn, E., Aury, J. M., Noel, B., Bretaudeau, A., Legeai, F., Warris, S., Amine Chebbi, M., Dubreuil, G., Duvic, B., Kremer, N., Gayral, P., Musset, K., Thibaut, J., Bigot, D., Bressac, C., Moreau, S. & 31 others, Periquet, G., Harry, M., Montagné, N., Boulogne, I., Sabeti-Azad, M., Maïbèche, M., Chertemps, T., Hilliou, F., Siaussat, D., Amselem, J., Luyten, I., Capdevielle-Dulac, C., Labadie, K., Laís Merlin, B., Barbe, V., de Boer, J. G., Marbouty, M., Cônsoli, F. L., Dupas, S., Hua Van, A., Le Goff, G., Bézier, A., Jacquin-Joly, E., Whitfield, J. B., Vet, L. E. M., Smid, H. M., Kaiser-Arnault, L., Koszul, R., Huguet, E., Herniou, E. A. & Drezen, J. M., 2020, (Cold Spring Harbor Perspectives in Biology).
Research output: Working paper › Academic

Open Access
Development and evaluation of two TaqMan assays for generic detection of Dickeya species
Zijlstra, C., De Haas, L. G., Krijger, M., Verstappen, E., Warris, S., de Haan, E. & van der Wolf, J., Jan 2020, In: European Journal of Plant Pathology. 156, p. 311-316 6 p.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
Draft genome sequences of three isolates of golubevia sp. basidiomycete fungi isolated from powdery mildew pustules
Russ, L., Warris, S., Lombaers-Van der Plas, C., Groenenboom-De Haas, L. H., Cordewener, J. H. G., Schijlen, E. & Köhl, J., 4 Jun 2020, In: Microbiology Resource Announcements. 9, 23, e00473-20.
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
1 Citation (Scopus)
Impact of Gut Bacteria on the Infection and Transmission of Pathogenic Arboviruses by Biting Midges and Mosquitoes
Möhlmann, T. W. R., Vogels, C. B. F., Göertz, G. P., Pijlman, G. P., ter Braak, C. J. F., te Beest, D. E., Hendriks, M., Nijhuis, E. H., Warris, S., Drolet, B. S., van Overbeek, L. & Koenraadt, C. J. M., Oct 2020, In: Microbial Ecology. 80, 3, p. 703-717
Research output: Contribution to journal › Article › Academic › peer-review

Open Access
4 Citations (Scopus)

Whole-genome amplification (WGA) create specific chimeric fragments, which consist mainly of palindrome sequences. We developed the tool Pacasus to detect and correct these palindromic sequences in long reads, for example from PacBio and Nanopore
Warris, S. (Creator), Schijlen, E. (Creator), van de Geest, H. C. (Creator), Vegesna, R. (Creator), Hesselink, T. (Creator), te Lintel Hekkert, B. (Creator), Sanchez Perez, G. F. (Creator), Medvedev, P. (Creator), Makova, K. D. (Creator) & de Ridder, D. (Creator), Wageningen UR, 31 Jul 2017
https://www.ebi.ac.uk/ena/data/view/PRJEB21791
Dataset
Fusarium poae Genome sequencing and assembly
Vanheule, A. (Creator), Audenaert, K. (Creator), Warris, S. (Creator), van de Geest, H. C. (Creator), Schijlen, E. (Creator), Höfte, M. (Creator), De Saeger, S. (Creator), Haesaert, G. (Creator), Waalwijk, C. (Creator) & van der Lee, T. (Creator), Wageningen UR, 3 Jun 2016
http://www.ebi.ac.uk/ena/data/view/PRJNA319914
Dataset

3 Oral presentation

Use of disease suppressiveness in the battle against potato blackleg
J.M. van der Wolf (Speaker), E.C. Coipan (Contributor), M.C. Krijger (Contributor), P. Kastelein (Contributor), E.H. Nijhuis (Contributor), V. Kurm (Contributor), S. Warris (Contributor) & J. Fokkema (Contributor)
Sep 2019
Activity: Talk or presentation › Oral presentation › Other
Professional, easy to use and robust bioinformatic tools
S. Warris (Speaker) & T.A.J. van der Lee (Contributor)
12 Dec 2018
Activity: Talk or presentation › Oral presentation › Other
Characterization of Pseudomonas species causing brown blotch of Agaricus bisporis
J.M. van der Wolf (Speaker), P. Kastelein (Contributor), M.C. Krijger (Contributor), M.J.A. Hendriks (Contributor), T.A.J. van der Lee (Contributor), S. Warris (Contributor), W. Stol (Contributor) & J.G.M. Amsing (Contributor)
30 May 2016
Activity: Talk or presentation › Oral presentation › Other

1 Finished

Microservices to connect genetic maps to (pan)genomes (KB-38-001-015)
Warris, S.
1/01/19 → 31/12/19
Project: EZproject